PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00262.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 390aa    MW: 42071.8 Da    PI: 7.3573
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00262.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33.1e-53171521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdee+++ yL +k  + +++  ++i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+e+++ 
  Pahal.C00262.1  17 LPPGFRFHPTDEEVITSYLLQKFLNPSFDP-RAIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDREIFKP 110
                     79*************************999.88***************99999*****************************************9 PP

             NAM  96 ........kgelvglkktLvfykgrapkgektdWvmheyrle 129
                             ++elvg+kktLvfy grap+g+kt+Wvmhe+rle
  Pahal.C00262.1 111 aaaaaegaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 152
                     888888777777***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-6113178IPR003441NAC domain
PROSITE profilePS5100556.16417178IPR003441NAC domain
PfamPF023653.9E-2718151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MVERCTVKSE QGGDLFLPPG FRFHPTDEEV ITSYLLQKFL NPSFDPRAIG EVDLNKCEPW  60
DLPSKAKMGE KEWYFFCHKD MKYPTGMRTN RATKEGYWKA TGKDREIFKP AAAAAEGAGR  120
ELVGMKKTLV FYMGRAPRGS KTNWVMHEFR LEGKSRNSNS NLRFNPKDEW VVCKVHHKNG  180
EASINKPAEE YSVATPNVSS VVSDGTGEGD EFLDSMINPM YFNSASSLPS TTTTINAAAP  240
PHNADYSLSS AAGATTATTT SSFVDLPNYG FNDATASYNL HQQVAVASSA SSTNSSSSYS  300
SLWNMLLNAD HNQAMGSYNL HHQALVAKAL GGNFAGGLPS SSSVTGILQH NYSQGVPQQK  360
LGNNYGDSST SAAIGPAATK NLGAPPNGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521518315170NO APICAL MERISTEM PROTEIN
1ut4_B1e-521518315170NO APICAL MERISTEM PROTEIN
1ut7_A1e-521518315170NO APICAL MERISTEM PROTEIN
1ut7_B1e-521518315170NO APICAL MERISTEM PROTEIN
3swm_A1e-521518318173NAC domain-containing protein 19
3swm_B1e-521518318173NAC domain-containing protein 19
3swm_C1e-521518318173NAC domain-containing protein 19
3swm_D1e-521518318173NAC domain-containing protein 19
3swp_A1e-521518318173NAC domain-containing protein 19
3swp_B1e-521518318173NAC domain-containing protein 19
3swp_C1e-521518318173NAC domain-containing protein 19
3swp_D1e-521518318173NAC domain-containing protein 19
4dul_A1e-521518315170NAC domain-containing protein 19
4dul_B1e-521518315170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9560081e-150EU956008.1 Zea mays clone 1555391 NAC domain-containing protein 77 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808112.10.0NAC domain-containing protein 45-like
SwissprotQ5CD171e-115NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLA0A2S3H5970.0A0A2S3H597_9POAL; Uncharacterized protein
STRINGPavir.J39049.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-80Arabidopsis NAC domain containing protein 87