PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00169.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26340.1 Da PI: 5.8069 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 74 | 123 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +g+++AeIrdp + kr++lg+f+taeeAa+ ++aa+ +l+g Pahal.C00169.1 74 QFRGVRHRP-WGKFAAEIRDP-----NvgKRVWLGTFDTAEEAAAVYDAAAIRLRG 123 69****888.**********9.....445*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.8E-30 | 73 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-37 | 74 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.222 | 74 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 74 | 132 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-11 | 75 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-10 | 75 | 86 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.83E-16 | 81 | 131 | No hit | No description |
PRINTS | PR00367 | 8.6E-10 | 97 | 113 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MDAPGRVVRA HFADAVDATD SDSDSDDRRR RSVRVIDLLP PSARAAPQRK KLVHYPSNDR 60 PGGERQGQGR GRRQFRGVRH RPWGKFAAEI RDPNVGKRVW LGTFDTAEEA AAVYDAAAIR 120 LRGRRAVTNF PLPSSSATLS SCAVSPAPSP MSSTTITPTT PLAESSSASP PSTQSSSVVD 180 ADEDVTRMRW CEDEPFESIE FYLPPVPTGG QCEFGDLGDL DDLFSPEPEP ASRNFPGGNF 240 RL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-23 | 73 | 136 | 4 | 68 | ATERF1 |
3gcc_A | 6e-23 | 73 | 136 | 4 | 68 | ATERF1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828366.1 | 1e-117 | pathogenesis-related genes transcriptional activator PTI6-like | ||||
TrEMBL | A0A2S3IC59 | 1e-116 | A0A2S3IC59_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J11205.1.p | 2e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 3e-12 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00169.1 |