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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00165.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35080.9 Da PI: 7.5567 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.5 | 9.6e-22 | 111 | 176 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 Dgy+WrKYGqK+++g+ ++rsYYrCt + gCp+k+ v+r+++ ++ +++Y geH+++ Pahal.C00165.1 111 DGYQWRKYGQKQIEGAMYARSYYRCTRSaeqGCPAKRTVQRNHDGGDgdgtppKYTVVYMGEHTCT 176 9*************************988889**********964322222226899******996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.3E-23 | 96 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-20 | 105 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-28 | 109 | 177 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.546 | 111 | 152 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-24 | 111 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MTLLIGRQGD DELLARLREL LLPSPMTTMI KVDQSGIIIG PPASSRDGRR RRRRESKRGG 60 RDDDSKSSYN GEQQHEEPPR HSCKTSSRKM KQRQKKMSST SSLVTSVPDF DGYQWRKYGQ 120 KQIEGAMYAR SYYRCTRSAE QGCPAKRTVQ RNHDGGDGDG TPPKYTVVYM GEHTCTANDS 180 MEAPVILETA AAAVAPVTST SIKRPQNHDG TAPTTSAGSC SITSTSTSTA TGIESPAISD 240 ITYWSSSSSG DYAVDDYCRL FGVHDSWAPP ATAAASSLQE MEDFTGPIRS PVHIATADGW 300 TIDHFLLQLA SNDQPVSHFS F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-13 | 101 | 175 | 1 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 53 | RDGRRRRRR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058620 | 0.0 | KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808246.1 | 0.0 | probable WRKY transcription factor 65 isoform X1 | ||||
TrEMBL | A0A2T8KGK2 | 0.0 | A0A2T8KGK2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ca00085.1.p | 9e-96 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-16 | WRKY DNA-binding protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00165.1 |