PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.C00164.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 264aa    MW: 29649.1 Da    PI: 5.8207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.C00164.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.84.4e-18139188249
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEE CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvve 49 
                      Dg++WrKYGqK+++g ++pr+YYrC+++  +C ++k +e++++++  + 
  Pahal.C00164.1 139 YDGHQWRKYGQKNINGRQHPRNYYRCAYRerNCLATKTIEQQEQNNAGTS 188
                     59**************************999**********998876554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.8E-21124210IPR003657WRKY domain
SuperFamilySSF1182908.5E-18132210IPR003657WRKY domain
SMARTSM007741.8E-24138211IPR003657WRKY domain
PfamPF031064.1E-22140210IPR003657WRKY domain
PROSITE profilePS5081117.075140200IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDRKSSLTLP PCGHGSEMIM ETMRRQQELL MQLRALVLPL LHAVHDTSAD IAVQLFDDVI  60
GCNVSVASKL EGCLMSTGEN DGPVVELVDD KSLVRKRNST DATGDRTTEE QAKPNNSAGQ  120
KRRRNDKRSR SLVTHVPHYD GHQWRKYGQK NINGRQHPRN YYRCAYRERN CLATKTIEQQ  180
EQNNAGTSSA MAGEENAEYT VVYYGDHTCK DHNISMVQAP QPVNMDLQNG EMAQATANEA  240
DLDLPALLEV FDNSLVDWDD WKM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805423.10.0probable WRKY transcription factor 46
TrEMBLA0A2T8KGM40.0A0A2T8KGM4_9POAL; Uncharacterized protein
STRINGPavir.Ca00084.1.p1e-153(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15881913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-14WRKY DNA-binding protein 46