PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

Pahal.C00083.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

G2-like

Protein Properties

Length: 465aa MW: 50439.6 Da PI: 8.2991

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.C00083.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.5e-31	81	134	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++av++LGG+++AtPk +l+lm+vkgL++ hvkSHLQ+YR+ Pahal.C00083.1 81 PRLRWTPELHHCFLRAVDRLGGQDRATPKLVLQLMNVKGLSIGHVKSHLQMYRS 134 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-29	77	135	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.026	77	137	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-15	78	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-23	80	136	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	82	133	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MEGSTKELLE YSSSTTDHQL QSSSAEAEDA AAAAADVPHD GSSSNNSSTV ELDEAGGGGD 60 SSRKTAASPS SVRPYVRSKN PRLRWTPELH HCFLRAVDRL GGQDRATPKL VLQLMNVKGL 120 SIGHVKSHLQ MYRSKKIDDS GQVIGGYSWR DDHHPLQQEG GQVYNLGHLS GLHHGQTTGA 180 ASTTTLLSAR CRQARNRSNQ SSRNKQQQLI GHPGNMWTEN PLVRDAGAAV LTGLAAAVVL 240 RLWEEVASRA LLEQKLCRKL VHITVGLVYF LMWPLFSSDD VYAPFLAPLI IVINIIKVTV 300 IGVGVVKDEG VVNSMTRHGD YRELLKGPLY YACAITLTTI VFWRTSPISI AVICNLCAGD 360 GVADIAGRRF GQVKLPHNPE KSYAGSIAMF MAGFIASVLY MCYFNIFGFV EKSWTMVGAF 420 GAISLAAAVV ESLPISTRLD DNLTVPLASG FVLHWSHKPV LHEH*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MEGSTKELLE YSSSTTDHQL QSSSAEAEDA AAAAADVPHD GSSSNNSSTV ELDEAGGGGD  60
SSRKTAASPS SVRPYVRSKN PRLRWTPELH HCFLRAVDRL GGQDRATPKL VLQLMNVKGL  120
SIGHVKSHLQ MYRSKKIDDS GQVIGGYSWR DDHHPLQQEG GQVYNLGHLS GLHHGQTTGA  180
ASTTTLLSAR CRQARNRSNQ SSRNKQQQLI GHPGNMWTEN PLVRDAGAAV LTGLAAAVVL  240
RLWEEVASRA LLEQKLCRKL VHITVGLVYF LMWPLFSSDD VYAPFLAPLI IVINIIKVTV  300
IGVGVVKDEG VVNSMTRHGD YRELLKGPLY YACAITLTTI VFWRTSPISI AVICNLCAGD  360
GVADIAGRRF GQVKLPHNPE KSYAGSIAMF MAGFIASVLY MCYFNIFGFV EKSWTMVGAF  420
GAISLAAAVV ESLPISTRLD DNLTVPLASG FVLHWSHKPV LHEH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-18	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-18	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-18	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-18	82	136	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-18	82	136	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the activation and reutilization of phytol from chlorophyll degradation in plant metabolism, including tocopherol biosynthesis. Catalyzes the conversion of phytol to phytol monophosphate (PMP) (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807942.1	1e-170	probable phytol kinase 2, chloroplastic
Refseq	XP_025827653.1	1e-170	probable phytol kinase 2, chloroplastic
Swissprot	Q5N9J9	3e-97	PHYK2_ORYSJ; Probable phytol kinase 2, chloroplastic
TrEMBL	A0A2T8I6X3	1e-169	A0A2T8I6X3_9POAL; Uncharacterized protein
STRING	Pavir.J01621.1.p	1e-157	(Panicum virgatum)
STRING	Si012637m	1e-157	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-36	G2-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.C00083.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Valentin HE, et al. The Arabidopsis vitamin E pathway gene5-1 mutant reveals a critical role for phytol kinase in seed tocopherol biosynthesis. Plant Cell, 2006. 18(1): p. 212-24 [PMID:16361393]