PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00036.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 42042.9 Da PI: 7.9599 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.3e-53 | 17 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee+++ yL +k + +++ ++i evd++k+ePwdLp+k+k +ekewyfF+++d ky+tg r+nratk+gyWkatgkd+e+++ Pahal.C00036.1 17 LPPGFRFHPTDEEVITSYLLHKFLNPSFDP-RAIGEVDLNKCEPWDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATKEGYWKATGKDREIFKP 110 79*************************999.88***************99999*****************************************9 PP NAM 96 ........kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++elvg+kktLvfy grap+g+kt+Wvmhe+rle Pahal.C00036.1 111 aaaaaggaGRELVGMKKTLVFYMGRAPRGSKTNWVMHEFRLE 152 888888877778***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.62E-61 | 13 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.002 | 17 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-27 | 18 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MVERCTVKSE QGGDLFLPPG FRFHPTDEEV ITSYLLHKFL NPSFDPRAIG EVDLNKCEPW 60 DLPSKAKMGE KEWYFFCHKD MKYPTGMRTN RATKEGYWKA TGKDREIFKP AAAAAGGAGR 120 ELVGMKKTLV FYMGRAPRGS KTNWVMHEFR LEGKSRNSNS NLRFNPKDEW VVCKVHHKNG 180 ETSINKPAEE YSVATPNVSS VVSDGTGEGD EFLESMINPM CFNSASSLPG TTTTINAAPP 240 HNADYSVSST AAGATTTTTT SSFVDLPNYG FNDATASYNL HQVAVANSAA SANSSSSYSS 300 LWNMLLHADH NQAIMGSYNL HHQALAAKAL GGNFAGGLPS SSSVTGILQH NYSQGVPQQK 360 LGNSYGDSST AAIGPAATKN LGAPPAMRY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 15 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 15 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 15 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 15 | 179 | 15 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 15 | 179 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 15 | 179 | 15 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 15 | 179 | 15 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU956008 | 1e-155 | EU956008.1 Zea mays clone 1555391 NAC domain-containing protein 77 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826552.1 | 0.0 | NAC domain-containing protein 45-like | ||||
Swissprot | Q5CD17 | 1e-111 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | A0A2S3IC60 | 0.0 | A0A2S3IC60_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J39049.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 9e-80 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00036.1 |