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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.C00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 118aa MW: 13705.4 Da PI: 9.3687 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 57.2 | 3.2e-18 | 74 | 117 | 2 | 42 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa 42 dDg++WrKYG K+ +s+fpr YYrCt++ +Cp++k+v++++ Pahal.C00001.1 74 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKD 117 8***************************99999********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-17 | 62 | 117 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-18 | 66 | 117 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.124 | 68 | 118 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-15 | 73 | 118 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-18 | 74 | 116 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
AAEFPQETSP LSLPLHQFSV LPPLLSFTIL AMALDSVPAY LSDLGSSHRA VRTQQQRIRK 60 DERTWTSDTY APYDDGHQWR KYGEKKLSNS NFPRFYYRCT YKNDMKCPAT KQVQQKDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058629 | 1e-177 | KU058629.1 UNVERIFIED: Panicum miliaceum WRKY20-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810265.1 | 2e-60 | probable WRKY transcription factor 46 isoform X1 | ||||
Refseq | XP_025827915.1 | 2e-60 | probable WRKY transcription factor 46 isoform X1 | ||||
Swissprot | Q9SHB5 | 9e-14 | WRK55_ARATH; WRKY transcription factor 55 | ||||
TrEMBL | A0A2T7E4I6 | 5e-59 | A0A2T7E4I6_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8I724 | 4e-59 | A0A2T8I724_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8KGM7 | 5e-59 | A0A2T8KGM7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J31578.1.p | 8e-59 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2032 | 35 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 4e-16 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.C00001.1 |
Publications ? help Back to Top | |||
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