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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.B05003.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
MYB |
| Protein Properties |
Length: 303aa MW: 33317.2 Da PI: 5.1639 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B05003.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 60.5 | 3.7e-19 | 24 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd+llv++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
Pahal.B05003.1 24 RGPWTVEEDLLLVNYIAAHGEGRWNALARCAGLRRTGKSCRLRWLNYL 71
89********************************************97 PP
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| 2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
Pahal.B05003.1 77 RGNITAQEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 120
7999******************.*********.***********96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 303 aa
Download sequence Send
to blast |
MAARDQREMS SDEESSVAPG DLRRGPWTVE EDLLLVNYIA AHGEGRWNAL ARCAGLRRTG 60
KSCRLRWLNY LRPDLRRGNI TAQEQLLILD LHSRWGNRWS KIAQHLPGRT DNEIKNYWRT 120
RVQKHARQLN CDVNSQQFKD LMRYLWMPRL LERISSGDDG RGVATPQLPA WPVDDVELSC 180
TTAASSSSVS TDGTQQQLVS PPAPPATSAF GESAPSGNDG SYSYSNNSNT AAMWGTLCQP 240
PQTDYHLLVA GAEAACSWSD ESLLAPGLSG VYGDMGMGLP ELGDTMWGAG ADDLWYTQIM 300
GL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HF679434 | 1e-148 | HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Yang A,Dai X,Zhang WH
A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
J. Exp. Bot., 2012. 63(7): p. 2541-56
[PMID:22301384] - Chen X, et al.
The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
Plant Cell Physiol., 2014. 55(3): p. 604-19
[PMID:24399239] - Lv Y, et al.
New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
Plant Cell Environ., 2016. 39(3): p. 556-70
[PMID:26381647] - Hong Y,Zhang H,Huang L,Li D,Song F
Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
Front Plant Sci, 2016. 7: p. 4
[PMID:26834774]
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