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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23020.9 Da PI: 6.7957 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 7.1e-19 | 71 | 119 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g Pahal.B04878.1 71 YRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRG 119 9*******.**********843...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-37 | 70 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.632 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-32 | 70 | 128 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.64E-22 | 70 | 128 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.61E-15 | 71 | 128 | No hit | No description |
Pfam | PF00847 | 1.3E-12 | 71 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 71 | 82 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-11 | 93 | 109 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MCGGAIISEF IPQRDARGRA GKRGLCAEDL WPQPGVGFDD VPAADGYELT GAASFPHDQE 60 PARKRERKTM YRGIRRRPWG KWAAEIRDPA KGARVWLGTF ATAEAAARAY DRAARRIRGS 120 KAKVNFPNED PPPDDDQAQG TMLPVSLVTD YDAAVIGYFH QQHPYVPNAV PVMAAPPEDA 180 VAYVHHHQLQ QDAGMEMWTF DGINTGVPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-23 | 71 | 127 | 6 | 63 | ATERF1 |
3gcc_A | 9e-23 | 71 | 127 | 6 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 69 | ARKRERKTM |
2 | 63 | 77 | KRERKTMYRGIRRRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976870 | 8e-86 | EU976870.1 Zea mays clone 992413 mRNA sequence. | |||
GenBank | KJ728348 | 8e-86 | KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803756.1 | 1e-153 | ethylene-responsive transcription factor RAP2-3-like | ||||
Swissprot | P42736 | 2e-36 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A2S3H4N6 | 1e-152 | A0A2S3H4N6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00136.1.p | 5e-97 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11585 | 28 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-28 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04878.1 |