PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04694.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 328aa    MW: 36561.3 Da    PI: 4.6766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04694.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96e-19100150155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  Pahal.B04694.1 100 TQYRGIRRRP-WGKWAAEIRDPQ----KgVRVWLGTFSTAEEAARAYDVEALRIRG 150
                     58********.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.89E-31100160No hitNo description
SMARTSM003801.5E-37101164IPR001471AP2/ERF domain
PfamPF008479.7E-12101150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-32101159IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-22101159IPR016177DNA-binding domain
PROSITE profilePS5103224.987101158IPR001471AP2/ERF domain
PRINTSPR003671.3E-11102113IPR001471AP2/ERF domain
PRINTSPR003671.3E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MCGGAILSDL YSPVRWTVTA GDLWGESGSS KNGKSWKRRS SWKFDEDDDD FEADFEDFED  60
CSSEEEVDFG HEEKEFQMNS SNFVEFNGHS AKVASRERKT QYRGIRRRPW GKWAAEIRDP  120
QKGVRVWLGT FSTAEEAARA YDVEALRIRG KKAKVNFPNT ITAAGKHHRR RVARPAKRIM  180
SQESLKSSNA SGQVVSAGSS TDGTVVKIEL LEPPASPLPV SSSWLDAFEL NQLGGLRHLE  240
ADGRETTEET DHETGVTADM VFGDGEVRLA DDFASYEPYP NFMQLPYLEG SSYENIDALF  300
NGKAAQDCVN IGGLWNFDDL PMDRGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20101163568ATERF1
3gcc_A2e-20101163568ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801024.10.0ethylene-responsive transcription factor ERF073-like
RefseqXP_025801025.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A2S3H3X90.0A0A2S3H3X9_9POAL; Uncharacterized protein
STRINGPavir.Ba00410.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145602123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-34ERF family protein