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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 1028aa MW: 114389 Da PI: 5.8681 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 180.5 | 2e-56 | 21 | 136 | 2 | 117 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++fqr Pahal.B04640.1 21 LEAQNRWLRPTEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQR 115 5679******************************************************************************************* PP CG-1 97 rcywlLeeelekivlvhylev 117 r+ywlLee + +ivlvhyle Pahal.B04640.1 116 RTYWLLEEGFMNIVLVHYLEI 136 ******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 80.736 | 16 | 142 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.2E-76 | 19 | 137 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.1E-50 | 22 | 135 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00782 | 440 | 528 | No hit | No description |
Gene3D | G3DSA:2.60.40.10 | 3.0E-6 | 440 | 527 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 2.1E-5 | 441 | 514 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 1.28E-17 | 441 | 527 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 6.44E-14 | 619 | 731 | No hit | No description |
SuperFamily | SSF48403 | 1.71E-17 | 625 | 733 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 4.8E-18 | 633 | 733 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 17.661 | 639 | 733 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.8E-8 | 645 | 734 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.14 | 672 | 704 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 9.19 | 672 | 704 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 290 | 711 | 740 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 2.92E-8 | 845 | 897 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.045 | 846 | 868 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.919 | 847 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0055 | 848 | 867 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0022 | 869 | 891 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.688 | 870 | 894 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 8.4E-5 | 872 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1028 aa Download sequence Send to blast |
MAEIRKYAMS NQAPDIPQIL LEAQNRWLRP TEICQILSNY KKFSIAPEPP NRPPSGSLFL 60 FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL 120 LEEGFMNIVL VHYLEIKGGK QNFNRAKEAE ENAGLSADSP ACSNSFASQS QVASQSMDAE 180 SPISGQISEY EDAETDNCRA SSRYHPFTEM QQPVDGIMMD KLLGASAPSV SVNNLGYLGE 240 MQPRPANFNN HFVTHNDVST AFNETTAGLR GGPRTSIDSV RFAEPYPEYP GGFTEPTLYS 300 SVATVGNNLD DSLQTFMSEA LYTNNLTQKE VDALSAAGIT SSQADNDGYT DQGARYPLLK 360 QSSLDPFKIE PDGLKKFDSF SRWMSNELPE VADLDIKSSS DAFWSTTETG NVADGSSIPI 420 NEQLDAFVVS PSLSQDQLFS IIDVSPSWAY NGTKTKVIIT GTFLAKKEDV ENCRWSCMFG 480 DVEVSAEVLV DGSLRCYTPV HHSGRVPFYV TCSNRVACSE VREFEFRDSE THYMDTSDLH 540 TTGINEMHLH IRLDKLLSLG PEDYEKYVLS NGNKSELIDT INTLMLDDKL SNLALPSDEK 600 ELSTVRDQNL EKQVKEKLYY WLIHKIHDDG KGPNVLGKEG QGVIHLVAAL GYDWAIKPIV 660 AAGVNVNFRD IRGWTALHWA ASCGRERTVG ALIANGAASG ALTDPTQQFP SGRTPADLAS 720 ENGHKGIAGF LAESALTSHL SALTLKDSQG GNVEEICGLA AAEDFAEPSS AQLACVDSQA 780 ESLKDSLGAV RKSTQAAARI FQAFRVESFH RKKVIEYGDD DCGLSDERTL SLISLKNAKP 840 GHSDMPMHSA AVRIQNKFRG WKGRKEFMII RQKIVKIQAH VRGHQVRKNY RKVVWSVGIV 900 EKVILRWRRK RRGLRGFQPE KQLEGPSSQI QPAKAEAEDE YDFLKDGRRQ AEGRLQRALA 960 RVHSMTQYPE ARDQYRRLQN CVNELQESQA MQDRMLSDSA GADGNDLMAE LEELCRGDGD 1020 APMSTIS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068035 | 1e-149 | BT068035.1 Zea mays full-length cDNA clone ZM_BFb0021I11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800735.1 | 0.0 | calmodulin-binding transcription activator 3-like | ||||
TrEMBL | A0A2S3H4E8 | 0.0 | A0A2S3H4E8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00386.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP608 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22300.2 | 0.0 | signal responsive 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04640.1 |