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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B04440.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 310aa MW: 33183.8 Da PI: 7.0198 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B04440.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 57.2 | 4e-18 | 48 | 98 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s++ GVr+++ +grWvAeI+d + ++ r +lg+f tae Aaka+++a++ l+g
Pahal.B04440.1 48 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 98
79********.7*********32...35***********************9998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MELNFQSQPS VFQLEDYSSY YYYYQQEAAA QAKPSKPRGR KKGSNNHSKF VGVRQRPSGR 60 WVAEIKDTTQ KIRMWLGTFE TAEAAAKAYD EAARLLRGNE ARTNFAPRIS PDCPLAVRIR 120 GLLHHKKIKK AKAAAARSSS AAASKQKAAS SPSPTTSNSN SNSHSTNSAC GGPSSSSSSS 180 SSSSAVSCDD AMAILNGSGG ALDAGEVYRP EVAPVGAEEF DSWMFESAFG QFPPLDSFAA 240 VESAVPAAPA EEEPAAAAAP GEMAEFERIK VERRISASLY AMNGLQEYFD RVFDASACDP 300 LWDLSPLCH*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727661 | 0.0 | KJ727661.1 Zea mays clone pUT5588 AP2-EREBP transcription factor (EREB62) gene, partial cds. |