PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04365.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 673aa    MW: 71774.5 Da    PI: 7.0548
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04365.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.7e-08279301426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C++f+r G C+ Gd+C F+Hg
  Pahal.B04365.1 279 VPCPNFRRPGGCPSGDSCEFSHG 301
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.8E-967137IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.61E-1467148IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-1669149IPR020683Ankyrin repeat-containing domain
SMARTSM002480.4370100IPR002110Ankyrin repeat
PROSITE profilePS500888.6037094IPR002110Ankyrin repeat
PROSITE profilePS5029717.23770145IPR020683Ankyrin repeat-containing domain
CDDcd002047.71E-1472148No hitNo description
SMARTSM002480.0014105137IPR002110Ankyrin repeat
PROSITE profilePS5008812.583105140IPR002110Ankyrin repeat
SMARTSM003565.6E-4275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995275303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-5276304IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-6279302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-4307340IPR000571Zinc finger, CCCH-type
SMARTSM0035621311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MGDLADLACA GEAARSHLAG GGRRDLLAEL LELAAADDAA GFREKLAAAG GDAELADGVG  60
LWYGRSKAYE PRTPLMVAAT YGSAEVVALL LGLGCVDVNR RPGIDGATPL HCAASGGSRN  120
AVAIVKVLLA AGADPVIPDA TGRFPADVIL APPASPDALG DLEMLLGRRR GLAVTTSVPS  180
GSSSPPLSSS PDEGNRSPST RSSSLSPITV DRAKKEYPVD PTLPDIKSSV YASDEFRMFA  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKHPYTAVP CPNFRRPGGC PSGDSCEFSH  300
GVFESWLHPS QYRTRLCKEG AACARRICFF AHDEDELRHV PHNSGAGLLS PRASSSIDMT  360
AAAALGLLPG SPTRHFVPTP LSPSATNNGG GAAAHWLQGS RLRSSFNPRD AQADDLGALL  420
EWESQYLGAL SLPQNSRSQP RLSTGLSIRP TAIAPSNLEE MYASDMAMSP RFTNDQSHSV  480
YSPAHKSALL NKFHQQKGLL SPVNTNRMYS PRGLDPSIIH SPFGGMSPRS PRTMEPTSPL  540
SARVGATVTQ RDMFDHFSSV NKHQLPSVGS PRNLNASWSN IGTPKSKVDW GIDNEELVRL  600
RHPAQPGAAE EEPDVSWVQS LVNNAELNGK RGEMAGMASG PMSRPDLSSQ GDSVDQTMIA  660
SWLEQQMHLE PK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5elk_A6e-1124133414118RING finger protein unkempt homolog
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0543660.0BT054366.1 Zea mays full-length cDNA clone ZM_BFc0002O06 mRNA, complete cds.
GenBankBT0544470.0BT054447.1 Zea mays full-length cDNA clone ZM_BFc0063F04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801940.10.0zinc finger CCCH domain-containing protein 50-like
SwissprotQ84SL20.0C3H50_ORYSJ; Zinc finger CCCH domain-containing protein 50
TrEMBLA0A2S3H3Q80.0A0A2S3H3Q8_9POAL; Uncharacterized protein
STRINGPavir.J07041.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-147CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]