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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Pahal.B04352.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
NAC |
| Protein Properties |
Length: 420aa MW: 44126.3 Da PI: 8.7173 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B04352.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.2 | 1.5e-53 | 33 | 161 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l++
Pahal.B04352.1 33 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-AIIAEVDLYKFDPWELPDKATFGEHEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILAS 126
79****************************.88***************8888899**************************************99 PP
NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
++e+vg+kk Lvfy+g+ pkg kt+W+mheyrl
Pahal.B04352.1 127 ngSREKVGVKKALVFYRGKPPKGLKTNWIMHEYRL 161
777788***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MRSMESTDSS SGSAPPRRQQ QQQPKQPGSA PDLPPGFRFH PTDEELVVHY LKKKAASAPL 60
PVAIIAEVDL YKFDPWELPD KATFGEHEWY FFSPRDRKYP NGARPNRAAT SGYWKATGTD 120
KPILASNGSR EKVGVKKALV FYRGKPPKGL KTNWIMHEYR LADAAGSTTA HRPPPGAGGG 180
GGKATSLRLD DWVLCRIYKK TNKLGVGDHQ RSLECEDSVE DAVVAAYHTH AAPAVAAAGG 240
GGAHGGNYTS LLHHHSGHED HFLDGLLTAE DAGGLSAGAS SLSHLAAAAR AAPSATKQLL 300
VPSSTPFNWL DASALAILPP TKRFHGYSGR DTTTDGGMSL SSPSERNHLA AVGAGAVDNG 360
ASGGASAIPT FLNPLGVQAA ATYHHHAILG TPVPPEAAAA AAACTFQHPY QLSGVNWNP*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 1e-72 | 23 | 200 | 10 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:17124321}. |
