PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04303.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 362aa    MW: 39339.4 Da    PI: 7.249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04303.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv ++k++G g+W+t ++  g+ R++k+c++rw +yl
   Pahal.B04303.1 14 KGPWTPEEDDKLVAYIKKHGQGNWRTLPKNAGLARCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
   Pahal.B04303.1  67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.066965IPR017930Myb domain
SuperFamilySSF466891.61E-3111108IPR009057Homeodomain-like
SMARTSM007174.4E-151363IPR001005SANT/Myb domain
PfamPF002498.7E-171461IPR001005SANT/Myb domain
CDDcd001674.24E-131661No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129420.4666116IPR017930Myb domain
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002491.2E-1567111IPR001005SANT/Myb domain
CDDcd001672.28E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRAPCCEKS GLKKGPWTPE EDDKLVAYIK KHGQGNWRTL PKNAGLARCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHAPRL DLLDLSALLK PAAYYPTQAD LDTLRAFEPL ANYPDLLRLA ASTLLSGSAA  180
IGDQQQFLPW LLQAQMAQAA AMVAQPPQQA EHNQFMQQQQ QAAGAACQMP DLVHASPTTV  240
AQQLAAAAQQ QQHQPQDMSA ACHSMQPPTG YVDSQLDVPA LMQMVQQPDA SNLQQWSSTV  300
TSSNNNVGSG VSTPSSSPVT GLNHSTSTAA TTYGGASASS SDAAALFNMQ LSDLLDVSDY  360
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485790.0AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802158.10.0transcription factor MYB102-like
TrEMBLA0A2S3H3C90.0A0A2S3H3C9_9POAL; Uncharacterized protein
STRINGPavir.J38204.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-84MYB-like 102