PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04226.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 571aa    MW: 64593.3 Da    PI: 6.6183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04226.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.91.8e-1272005692373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cAea+s++   +  +l+++ +  +s +g+p+qRl ay++e+L ar  +s++++y+al+++e +   s e l+++k++++++P++kf+++
  Pahal.B04226.1 200 KQLLTKCAEALSEERIDEFLKLVQQARGVVSITGEPIQRLGAYLLEGLVARHGNSGTNIYRALKCREPE---SNELLSYMKILYNICPYFKFGYM 291
                     689*****************************************************************9...99********************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +aN aI ea+ +e+++HiiDf+i qG+QW++L+qaLa+Rp+gpp++RiTg+++p s+  + e l  +g+ L+++ ee+++p+ef++l     + +
  Pahal.B04226.1 292 AANGAIAEALRNEDKIHIIDFQIAQGTQWITLIQALAARPGGPPHVRITGIDDPVSEyaRGEGLDLVGKMLKSMSEEFRIPLEFTPLPGVYATHV 386
                     ******************************************************999999**************************988899999 PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e L+++pgEalaVn+ lqlh+++desv+++++rd +L++vk+lsPkv ++veqe+ +n+++Fl rf+e+++yysa+f+s++a+lpr+ +eri+
  Pahal.B04226.1 387 TKEILDIRPGEALAVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFSETMDYYSAMFESIDANLPRDRKERIN 481
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+++ivn++aceg++r+erhe l+kW++rl++aGFkp+pls+++++ ++ ll+ ++ d y++ee++g+++lgWk+r+L+s+SaW
  Pahal.B04226.1 482 VEQHCLAKDIVNIIACEGKDRVERHELLGKWKSRLTMAGFKPYPLSSYVNSVIRKLLACYS-DKYTLEEKDGAMLLGWKNRKLISASAW 569
                     *********************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.756173551IPR005202Transcription factor GRAS
PfamPF035146.2E-125200569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MDLHQLLKYR LTGANVFYEF PTENNLPNTP WPGSPLKSEF SNSPYTPLSA QLECDNLSAI  60
SNTPDNQSST ETISAQPISP LEVDSSYRQA GILRENTQVR PDPLYATSRH NMQHALREIE  120
TVLMAPDADD AANNTKHEFE EHKPTQLMRQ RSRTWSHESR QPSPGVVRTQ FGSGYPTASY  180
EFRPEKRQRE LREDPQNMVK QLLTKCAEAL SEERIDEFLK LVQQARGVVS ITGEPIQRLG  240
AYLLEGLVAR HGNSGTNIYR ALKCREPESN ELLSYMKILY NICPYFKFGY MAANGAIAEA  300
LRNEDKIHII DFQIAQGTQW ITLIQALAAR PGGPPHVRIT GIDDPVSEYA RGEGLDLVGK  360
MLKSMSEEFR IPLEFTPLPG VYATHVTKEI LDIRPGEALA VNFTLQLHHT PDESVDVNNP  420
RDGLLRMVKG LSPKVTTLVE QESHTNTTPF LMRFSETMDY YSAMFESIDA NLPRDRKERI  480
NVEQHCLAKD IVNIIACEGK DRVERHELLG KWKSRLTMAG FKPYPLSSYV NSVIRKLLAC  540
YSDKYTLEEK DGAMLLGWKN RKLISASAWH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-681835693378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278600.0KJ727860.1 Zea mays clone pUT5952 GRAS transcription factor (GRAS49) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800433.10.0chitin-inducible gibberellin-responsive protein 1 isoform X1
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2S3H3090.0A0A2S3H309_9POAL; Uncharacterized protein
STRINGPavir.J35699.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106313643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]