PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B04035.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 135aa    MW: 13346.8 Da    PI: 9.9591
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B04035.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.72.7e-2286133148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +Cq+e+C+adl+ea +y+rrhkvC++hskapvvlv+gl+qrfCqqCsr
  Pahal.B04035.3  86 RCQAERCNADLNEAGQYNRRHKVCQTHSKAPVVLVAGLRQRFCQQCSR 133
                     6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.7E-2382133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114119.0584134IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.35E-2185133IPR004333Transcription factor, SBP-box
PfamPF031107.5E-1787133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MDRKDKSRRG SSSSAAAAAS MAALAAAAAA GEGSSSGSGS ADGALPPLGE EEDQKPPKLA  60
AVAGASSSSP VPARRGAAAG AGGGPRCQAE RCNADLNEAG QYNRRHKVCQ THSKAPVVLV  120
AGLRQRFCQQ CSRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-1878133257squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00634PBMTransfer from PK22320.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0654455e-55BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804566.13e-86squamosa promoter-binding-like protein 13
TrEMBLA0A2S3H2X72e-86A0A2S3H2X7_9POAL; Uncharacterized protein
STRINGPavir.Bb02800.1.p6e-36(Panicum virgatum)
STRINGSi032170m2e-36(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.24e-19squamosa promoter binding protein-like 8