PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B04035.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 219aa MW: 21960.8 Da PI: 9.9314 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.4e-40 | 86 | 163 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adl+ea +y+rrhkvC++hskapvvlv+gl+qrfCqqCsrfhelsefDe++rsCr rLa+hnerrrk++a Pahal.B04035.1 86 RCQAERCNADLNEAGQYNRRHKVCQTHSKAPVVLVAGLRQRFCQQCSRFHELSEFDEARRSCRLRLAGHNERRRKSSA 163 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.2E-33 | 82 | 148 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.846 | 84 | 161 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.05E-37 | 85 | 166 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.9E-31 | 87 | 160 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDRKDKSRRG SSSSAAAAAS MAALAAAAAA GEGSSSGSGS ADGALPPLGE EEDQKPPKLA 60 AVAGASSSSP VPARRGAAAG AGGGPRCQAE RCNADLNEAG QYNRRHKVCQ THSKAPVVLV 120 AGLRQRFCQQ CSRFHELSEF DEARRSCRLR LAGHNERRRK SSADTHGHGG GGGGGGSSNG 180 GAGGSSSSNG GAGDGCRHAD QDGRGHQGNP PPNHFQIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-35 | 78 | 160 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065445 | 9e-92 | BT065445.2 Zea mays full-length cDNA clone ZM_BFb0161D05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804566.1 | 1e-151 | squamosa promoter-binding-like protein 13 | ||||
Swissprot | Q6Z461 | 1e-50 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A2S3H2K9 | 1e-150 | A0A2S3H2K9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02800.1.p | 4e-75 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33810.1 | 1e-35 | squamosa promoter binding protein-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B04035.1 |