PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03967.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 914aa    MW: 102420 Da    PI: 8.7896
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03967.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.81.4e-51331474117
            CG-1   4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 
                     e  +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++ee+p+f rr
  Pahal.B03967.1  33 EaGTRWFRPNEIYAVLANHARFKVHAQPVDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEEDPNFFRR 127
                     4379******************************************************************************************* PP

            CG-1  98 cywlLeeelekivlvhylev 117
                     cywlL++ele+ivlvhy+++
  Pahal.B03967.1 128 CYWLLDKELERIVLVHYRQT 147
                     *****************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143773.12727153IPR005559CG-1 DNA-binding domain
SMARTSM010766.7E-6230148IPR005559CG-1 DNA-binding domain
PfamPF038592.2E-4434146IPR005559CG-1 DNA-binding domain
SuperFamilySSF812966.72E-11380466IPR014756Immunoglobulin E-set
SuperFamilySSF484036.53E-18525669IPR020683Ankyrin repeat-containing domain
CDDcd002041.68E-16557665No hitNo description
Gene3DG3DSA:1.25.40.202.1E-18564672IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.298573677IPR020683Ankyrin repeat-containing domain
PfamPF127962.8E-8579669IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008811.808606638IPR002110Ankyrin repeat
SMARTSM002486.3E-6606635IPR002110Ankyrin repeat
SMARTSM00248560645674IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-11720822IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24771793IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.334772801IPR000048IQ motif, EF-hand binding site
PfamPF006120.0057774792IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0019794816IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.53795819IPR000048IQ motif, EF-hand binding site
PfamPF006127.3E-4796816IPR000048IQ motif, EF-hand binding site
SMARTSM000157.3875897IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.249877905IPR000048IQ motif, EF-hand binding site
PfamPF006120.12878897IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MAGGAGARDP LVASEIHGFL TCADLNFDKL MAEAGTRWFR PNEIYAVLAN HARFKVHAQP  60
VDKPASGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGEE  120
DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPPPHIEA EVAEVPPINI IHYTSPIIST  180
DSASARTELS SCAAAAAPEE INSHGGGAIS CETDDHDSSL ESFWADLLES SMKNDTSVRG  240
GSLTPNQQTN DGMRDSGNSI LNTNARSNAI FSSPANVVSE AYAANPGLNQ VSESYYGALK  300
HQVNQSPSLL TSDLDSQSKP HANSIIKTLV DGNMPSDVPA RQNSLGLWKY LDDDITCLVN  360
NPSSAIPITR PVIDEMPFHI IEISSEWAYC TDDTKVLVVG YFLDNYKHLS GANLYCVIGE  420
QCVTADIVQT GVYRFMARPH VPGRVNLYLT LDGKTPISEV LSFEYRRMLG SSDDDEPKKS  480
KLQMQMRLAR LLFSTSQKKI PPKFLVEGSR VSNLLSASTE KEWMNLFKYV TDSKGTNIPA  540
TESLLELVLR NKLQEWLVEK IIEGHKSTDR DDLGQGPIHL CSFLGYTWAI RLFSLSGFSL  600
DFRDSSGWTA LHWAAYYGRE KMVAALLSAG ANPSLVTDPT HDDPGGHTAA DIAARQGFDG  660
LAAYLAEKGL TAHFEAMSLS KDKKSTSRTQ SIKQISKEFE NLTEQELCLR ESLAAYRNAA  720
DAASNIQAAL RERTLKLQTK AIQSANPEIE AATIVAAMRI QHAFRNYNRK KMMRAAARIQ  780
SHFRTWQMRR NFMNMRRQAI KIQAAYRGHQ VRRQYRKVIW SVGVVEKAIL RWRKKRKGLR  840
GIATGMPVAM STDTEAASTA EEDYYQVGRQ QAENRFNRSV VRVQALFRSH RAQQEYRRMK  900
VAHEEAKVEF SQN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800750.10.0calmodulin-binding transcription activator CBT isoform X1
SwissprotQ7XHR20.0CBT_ORYSJ; Calmodulin-binding transcription activator CBT
TrEMBLA0A2S3H2T90.0A0A2S3H2T9_9POAL; Uncharacterized protein
STRINGPavir.Ba00948.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98312933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators