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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03967.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | CAMTA | ||||||||
Protein Properties | Length: 914aa MW: 102420 Da PI: 8.7896 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164.8 | 1.4e-51 | 33 | 147 | 4 | 117 |
CG-1 4 e.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 e +rw +++ei+a+L+n++++++++++ ++p sg+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++ee+p+f rr Pahal.B03967.1 33 EaGTRWFRPNEIYAVLANHARFKVHAQPVDKPASGTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEEDPNFFRR 127 4379******************************************************************************************* PP CG-1 98 cywlLeeelekivlvhylev 117 cywlL++ele+ivlvhy+++ Pahal.B03967.1 128 CYWLLDKELERIVLVHYRQT 147 *****************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 73.127 | 27 | 153 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 6.7E-62 | 30 | 148 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 2.2E-44 | 34 | 146 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF81296 | 6.72E-11 | 380 | 466 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 6.53E-18 | 525 | 669 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.68E-16 | 557 | 665 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 2.1E-18 | 564 | 672 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 18.298 | 573 | 677 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.8E-8 | 579 | 669 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 11.808 | 606 | 638 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 6.3E-6 | 606 | 635 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 560 | 645 | 674 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.56E-11 | 720 | 822 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.24 | 771 | 793 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.334 | 772 | 801 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0057 | 774 | 792 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0019 | 794 | 816 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.53 | 795 | 819 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 7.3E-4 | 796 | 816 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 7.3 | 875 | 897 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.249 | 877 | 905 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.12 | 878 | 897 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 914 aa Download sequence Send to blast |
MAGGAGARDP LVASEIHGFL TCADLNFDKL MAEAGTRWFR PNEIYAVLAN HARFKVHAQP 60 VDKPASGTVV LYDRKVVRNF RKDGHNWKKK KDGKTVQEAH EKLKIGNEEK VHVYYARGEE 120 DPNFFRRCYW LLDKELERIV LVHYRQTSEE NAIPPPHIEA EVAEVPPINI IHYTSPIIST 180 DSASARTELS SCAAAAAPEE INSHGGGAIS CETDDHDSSL ESFWADLLES SMKNDTSVRG 240 GSLTPNQQTN DGMRDSGNSI LNTNARSNAI FSSPANVVSE AYAANPGLNQ VSESYYGALK 300 HQVNQSPSLL TSDLDSQSKP HANSIIKTLV DGNMPSDVPA RQNSLGLWKY LDDDITCLVN 360 NPSSAIPITR PVIDEMPFHI IEISSEWAYC TDDTKVLVVG YFLDNYKHLS GANLYCVIGE 420 QCVTADIVQT GVYRFMARPH VPGRVNLYLT LDGKTPISEV LSFEYRRMLG SSDDDEPKKS 480 KLQMQMRLAR LLFSTSQKKI PPKFLVEGSR VSNLLSASTE KEWMNLFKYV TDSKGTNIPA 540 TESLLELVLR NKLQEWLVEK IIEGHKSTDR DDLGQGPIHL CSFLGYTWAI RLFSLSGFSL 600 DFRDSSGWTA LHWAAYYGRE KMVAALLSAG ANPSLVTDPT HDDPGGHTAA DIAARQGFDG 660 LAAYLAEKGL TAHFEAMSLS KDKKSTSRTQ SIKQISKEFE NLTEQELCLR ESLAAYRNAA 720 DAASNIQAAL RERTLKLQTK AIQSANPEIE AATIVAAMRI QHAFRNYNRK KMMRAAARIQ 780 SHFRTWQMRR NFMNMRRQAI KIQAAYRGHQ VRRQYRKVIW SVGVVEKAIL RWRKKRKGLR 840 GIATGMPVAM STDTEAASTA EEDYYQVGRQ QAENRFNRSV VRVQALFRSH RAQQEYRRMK 900 VAHEEAKVEF SQN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00435 | DAP | Transfer from AT4G16150 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800750.1 | 0.0 | calmodulin-binding transcription activator CBT isoform X1 | ||||
Swissprot | Q7XHR2 | 0.0 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A2S3H2T9 | 0.0 | A0A2S3H2T9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba00948.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9831 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03967.1 |