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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.B03870.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
GRF |
| Protein Properties |
Length: 267aa MW: 27873.1 Da PI: 4.6513 |
| Description |
GRF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B03870.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRC | 73.5 | 2.4e-23 | 177 | 221 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45
++epgrCrRtDGKkWRC+r++++++k+CErH+hrgr+r + ++e
Pahal.B03870.1 177 EPEPGRCRRTDGKKWRCWRNTIPNEKYCERHMHRGRKRPVQLVVE 221
69************************************9998875 PP
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| 2 | QLQ | 54.3 | 4.1e-19 | 111 | 146 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
aFTa+Qlq+L++Q +y+y+aa++PvP +L+++i+k
Pahal.B03870.1 111 AFTAMQLQELEQQSRVYQYMAARVPVPTHLVFPIWK 146
8*********************************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MAAEGEAKNP SGGGGGGGGV DNPQVEAAPS VPAPAEGEAV LVAAQGTGQG PEGEKADQEG 60
EKDDGACRDL VLVEDPEVVA VEDPEEAAAT AALQEEMKAL VASIPDGAGA AFTAMQLQEL 120
EQQSRVYQYM AARVPVPTHL VFPIWKSVTG ASSEGAQKYP TLMGLATLCL DFGKNPEPEP 180
GRCRRTDGKK WRCWRNTIPN EKYCERHMHR GRKRPVQLVV EDDEPDSASG SKSTPGKATE 240
GAKKADDKSP SNKKLAVAAP AAVQST*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT042513 | 0.0 | BT042513.1 Zea mays full-length cDNA clone ZM_BFb0310G14 mRNA, complete cds. |
| GenBank | BT087437 | 0.0 | BT087437.1 Zea mays full-length cDNA clone ZM_BFb0076N13 mRNA, complete cds. |
| GenBank | EF515849 | 0.0 | EF515849.1 Zea mays putative growth-regulating factor 10 (GRF10) mRNA, complete cds. |
| GenBank | EU960601 | 0.0 | EU960601.1 Zea mays clone 226522 growth-regulating factor mRNA, complete cds. |
| Publications
? help Back to Top |
- Soderlund C, et al.
Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
PLoS Genet., 2009. 5(11): p. e1000740
[PMID:19936069] - Schnable PS, et al.
The B73 maize genome: complexity, diversity, and dynamics.
Science, 2009. 326(5956): p. 1112-5
[PMID:19965430] - Zhang D, et al.
GRF-interacting factor1 Regulates Shoot Architecture and Meristem Determinacy in Maize.
Plant Cell, 2018. 30(2): p. 360-374
[PMID:29437990]
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