PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.B03829.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 360aa MW: 39313.6 Da PI: 8.5695

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B03829.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	39.7	1.2e-12	23	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm................rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 +W+++ + L+ea++ ++ +r+klk +W ++++ + + ++p+qCk+k+e+++kry+++ + + + + + Pahal.B03829.1 23 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsahcaddaaaagkppgGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPAAAGPS 117 5********************************9999999******988888899*************99876666536778889 PP trihelix 79 cpyfdqle 86 +++f +++ Pahal.B03829.1 118 WRFFARMD 125 ***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.3E-14	21	126	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MDGLPDADAA PLAAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWVDIAREV 60 SAHCADDAAA AGKPPGGGGN SAKTPNQCKN KIESMKKRYR AESAAVARAG PAAAGPSWRF 120 FARMDGLLKG PAVCSGQVQQ ADLSNSIDLR APAKAEAEVE ADFTAQLTDA GPGVFSDLMN 180 IDTNGAVPEK AEKVDNSVQK ESRAADSDAN VSSPRSKVAN EDAEEVDKVW DRPKKRKSTE 240 FDIAKSIELL ASSYLKIEHA RMEMCRETEK MRVEAEIKKG EMELKRTEIM AKTHLQIAKL 300 FAKRLKEGCG KTGGSSSVTA EVDTHTKKGE NGIQISIWMK RNKEFYRFRV MCHSLMLSS*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MDGLPDADAA PLAAAAPPQK RDEWSESGIV RLLEAYEAKW LLRNRAKLKW SDWVDIAREV  60
SAHCADDAAA AGKPPGGGGN SAKTPNQCKN KIESMKKRYR AESAAVARAG PAAAGPSWRF  120
FARMDGLLKG PAVCSGQVQQ ADLSNSIDLR APAKAEAEVE ADFTAQLTDA GPGVFSDLMN  180
IDTNGAVPEK AEKVDNSVQK ESRAADSDAN VSSPRSKVAN EDAEEVDKVW DRPKKRKSTE  240
FDIAKSIELL ASSYLKIEHA RMEMCRETEK MRVEAEIKKG EMELKRTEIM AKTHLQIAKL  300
FAKRLKEGCG KTGGSSSVTA EVDTHTKKGE NGIQISIWMK RNKEFYRFRV MCHSLMLSS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025802935.1	0.0	trihelix transcription factor ASIL1-like
TrEMBL	A0A2S3H245	0.0	A0A2S3H245_9POAL; Uncharacterized protein
STRING	Pavir.Ba01421.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7333	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	2e-44	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.B03829.1