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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03741.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Nin-like | ||||||||
Protein Properties | Length: 877aa MW: 96092.8 Da PI: 6.7367 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 91.3 | 7.2e-29 | 559 | 610 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ Pahal.B03741.1 559 AEKTVSLQVLRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 610 5899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.734 | 549 | 630 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 2.4E-25 | 562 | 610 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 5.23E-22 | 768 | 865 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 3.5E-25 | 775 | 859 | No hit | No description |
SMART | SM00666 | 5.9E-19 | 778 | 861 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 21.918 | 778 | 861 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.21E-41 | 779 | 859 | No hit | No description |
Pfam | PF00564 | 3.2E-15 | 779 | 859 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 877 aa Download sequence Send to blast |
MCMEAWSFAS RSPAGEKSNP ESLTCMEGGG GDPQPSVSLQ ARTPSEGGAA VDLDLLEQLL 60 SGDNGWFEVV SRSPNSLVSP PPAAFFSADV TATAAAATTQ AASSWWIQTG GGASPSSVRE 120 RFSQALSYIR ETQSDGDVLV QLWVPVNRGD GQLVLTTSGQ PFTLDQRSDS LIRFREVSTK 180 YQFSADVKSG DSPGLPGRVF IGRLPEWSPD IRYFTSYEYP RVRDAQYLDI HGTMGLPVFE 240 KESYNCLGVI ELIMTRQKLN FTSELNTICS ALQAVNLRST EVSSVPRMQF STASYKDALP 300 EILEVLRAAC LTHKLPLAQT WVTCAQQGKR GSRHSDENYR YCISTIDEAC FVNEPKMQDF 360 HDACSEHHLL RGQGVAGKAF TTNQPCFLPD IGSSTKLEYP LSHHAKIFDL KGAVAIRLRC 420 TRTGTADFVL EFFLPTDCEA LEEQKVVLDS LSGTMRSVCQ TLRVVTDKEM EDEAIWEMNE 480 LNSFTPQGKN KVEELSFGGS SADRRGEASW TSLAETSQQE SELAAMQMHG MFSSGGQGPS 540 LSGVQATAEG SKAKRRTKAE KTVSLQVLRQ YFAGSLKDAA RSLGVCPTTL KRICRQHGIT 600 RWPSRKIKKV DHSLRKLQQI IDSVHGAETS FQLNTLYKDL TNTSISSENN LSGSNTVPPT 660 NQSNLTNFDK HRHHKSNSIV PSTSHSHSSC SHNSDSSPSC SGGATKHAPQ GIIDLMKSGN 720 PVKDSPIQTL QTENTSLYEH FSVNEAPTNL LQDVTEKANG GLHSKRSPSS PKHNAEANMR 780 VKATFGSEKV RFRLNPECNF QELKYEIAKR LSIVDTSSLI LKYLDDDSEW VLMTCDADLQ 840 ECLHVYKLAD IQTIKISVHL AVSPAARVTT GHTGLS* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800526.1 | 0.0 | protein NLP1-like isoform X1 | ||||
TrEMBL | A0A2S3H1U8 | 0.0 | A0A2S3H1U8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb02544.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5554 | 38 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03741.1 |