PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03653.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 133aa    MW: 14689.7 Da    PI: 11.3194
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03653.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.9e-143171145
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAaka 45
                    + y+GVr++  +g Wv+eIr+p++   + r++lg+f ta++Aa++
  Pahal.B03653.1 31 PSYRGVRRRG-WGVWVSEIREPRK---KSRIWLGTFATAKMAARL 71
                    57*****998.**********843...6***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.75E-153170No hitNo description
PfamPF008474.3E-93171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-203270IPR001471AP2/ERF domain
SMARTSM003802.5E-163280IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-123271IPR016177DNA-binding domain
PROSITE profilePS5103215.5673270IPR001471AP2/ERF domain
PRINTSPR003671.1E-83344IPR001471AP2/ERF domain
PRINTSPR003671.1E-85571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MARSSHQLAP GEAGDQEGHA AGRRSGAGRH PSYRGVRRRG WGVWVSEIRE PRKKSRIWLG  60
TFATAKMAAR LNFPHLAHEL PRPASPPPPT SGPPPRSWRQ QCWDDIWLQR GQCASGPPEH  120
LPDLLLDLKD GL*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3076621e-43AJ307662.1 Oryza sativa genomic DNA fragment, chromosome 2.
GenBankAP0050061e-43AP005006.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0519E06.
GenBankAP0149581e-43AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY3452321e-43AY345232.1 Oryza sativa transcription factor Rap212 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194839.16e-27ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-23ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A287E3504e-26A0A287E350_HORVV; Uncharacterized protein
STRINGMLOC_75601.16e-27(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-11ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]