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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.B03609.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
SRS |
| Protein Properties |
Length: 224aa MW: 23412.2 Da PI: 10.5066 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B03609.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 88.8 | 1.2e-27 | 43 | 189 | 4 | 153 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstW..vpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96
g ++ qdC ak +Cah RCR CC rgf C hv+ pa +e++q++ + s+aa + ++ +kr+r ++ +++ ++ss ++
Pahal.B03609.1 43 GIIRYQDCWLLAKAGCAHPRCRHCCGGRGFACPAHVRPSCsdTPAFPCSEHHQRTLT--STAAVAPLRNPHKRPRPR-PPPRAPAATPTTSSVDQ 134
55778********************************65422788888887555544..445555566677777765.33444444555566666 PP
DUF702 97 kkeletsslP.eevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
+++ s+ eevs +avfr+vr++ + +e+aY+++v+i G vf+G+Lyd G
Pahal.B03609.1 135 PTTAAPGSFArEEVSLDAVFRRVRLGP---DGAEVAYHATVTICGRVFRGVLYDVGSR 189
6666666665278***********986...5689*********************975 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 224 aa
Download sequence Send
to blast |
MHHASDAASF LSAATSADGS LEQQRQLVRG AASSSPRGTG AAGIIRYQDC WLLAKAGCAH 60
PRCRHCCGGR GFACPAHVRP SCSDTPAFPC SEHHQRTLTS TAAVAPLRNP HKRPRPRPPP 120
RAPAATPTTS SVDQPTTAAP GSFAREEVSL DAVFRRVRLG PDGAEVAYHA TVTICGRVFR 180
GVLYDVGSRR RRRSSTASTD TAGSSDGSSR STAGGGLDLT LRL*
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