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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B03551.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
ERF |
Protein Properties |
Length: 254aa MW: 26366.2 Da PI: 7.0771 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B03551.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 49.5 | 1e-15 | 55 | 105 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
+ ++GVr++ grWv+e+r+p ++g +r +lg++ ae Aa+a++aa+++l
Pahal.B03551.1 55 PVFRGVRRRGAAGRWVCEVRVPGNRG--ARLWLGTYVAAEAAARAHDAAMLAL 105
579******************95554..**********************987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 254 aa
Download sequence Send
to blast |
MDMGRLEHST SSTSSTSASS SSSGQNKASP SSSPSLQAPK KRPAGRTKFR ETRHPVFRGV 60 RRRGAAGRWV CEVRVPGNRG ARLWLGTYVA AEAAARAHDA AMLALGRGRS GAGLNFPDSA 120 WRLALPPPSA LPSLDDARRA ALEAVADFQR RSGAAGSAAA VDEVTSRSAS APPPLQDISG 180 SPATSLEHVP AKADETAALD GGAFEPDWFG GMDLDTYYAS LAEGLLMEPP PPPAAWEHGD 240 FGDGGADVAL WSY*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF450481 | 1e-125 | AF450481.1 Zea mays DREB-like protein (DREB1A) mRNA, complete cds. |
GenBank | AY964718 | 1e-125 | AY964718.1 Zea mays cultivar Qi319 CBF3-like protein (CBF3) mRNA, complete cds. |
GenBank | AY966902 | 1e-125 | AY966902.1 Zea mays CRT/DRE binding factor (CBF3) gene, complete cds. |