PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03536.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 488aa    MW: 51494.5 Da    PI: 9.7414
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03536.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_139.99.2e-13336394563
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     kr +r   NR++A +s +RK +++ eLe+kv +L+ e ++L +++   + e+++lk ++
  Pahal.B03536.1 336 KRVKRILANRISAAKSKERKVKYMGELERKVHVLQMETSTLSSKATLSQRECEALKVQN 394
                     899*****************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-15332396IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.002334397IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11336391No hitNo description
PfamPF001701.0E-10336394IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.4E-11336393No hitNo description
CDDcd147031.43E-19337388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDEDQGADPA RRARLLSPPS GQPQAPRAPA LPMDLSSQYQ RRFAPSLFLP PMAPRLAPGS  60
GFSAFSNYQG PPALAPPAAG GSHLARSLPK APLFSTDSLA PLPYSADPAA GVGAGAGAAV  120
PRSPPSLGSE QQGPSASGLP PRGAGHRRSR SDFLVGFSLQ NQLPLPVLPA AEGFSKSADA  180
AALEELFRSY RDPKSLSALG SSVDGPSERN SHLGNQMSSR RAWSPADSSD NEAESWGTGG  240
GGGTTTSHPR HCRSLSVDSI MGNLNFGALG QVSPTLPPPS PASGAGGSVP HTGSGPSGSA  300
AAVATSELAN GEFTESEMKK IMANDRLAEL ALADPKRVKR ILANRISAAK SKERKVKYMG  360
ELERKVHVLQ METSTLSSKA TLSQRECEAL KVQNSEMRIR LQALEQQAHL KDALNQALSA  420
EVQRLKQAAG EASDAHAPNG SHHHMHRQIL EQQLLQLQKQ PSEAQKAEQQ QPQESEQFKA  480
QQKQWNH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803483.10.0transcription factor RF2a-like
TrEMBLA0A2S3H1B70.0A0A2S3H1B7_9POAL; Uncharacterized protein
STRINGPavir.J03608.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148701820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.37e-54bZIP family protein