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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B03525.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
bHLH |
Protein Properties |
Length: 271aa MW: 28487.1 Da PI: 7.3058 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B03525.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.4 | 4.7e-12 | 106 | 152 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h e Er+RR+++N +f Lr +P+ +++Ka+ L A +YI +L
Pahal.B03525.1 106 ASHVESERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAARYIAEL 152
5899***********************6.....49**************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 271 aa
Download sequence Send
to blast |
MDEHLSPSSS SRPALLSFSE AASCTILELP SFEVPEQWLL ADVMAAGENE NDDVGGTPRP 60 AGGVHVLSPA DSELSKLPLP SPSAPAPAKR RGRKPGPRAA AGAAAASHVE SERQRREKLN 120 RRFCDLRAAV PTVSRMDKAS LLADAARYIA ELRARVAQLE ADARHHAPVA RWEPDSAGGD 180 AAAAVGGELY VRKVGRDAAV VRVTSGARHA PAWLMGALRS LELQVQHACV SRVHGVTTQD 240 VLVNLPAGAT ALQDHDGLRG ALLQRLEDSG *
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 6e-16 | 107 | 162 | 8 | 63 | Transcription factor MYC2 |
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