 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.B03522.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
bHLH |
| Protein Properties |
Length: 243aa MW: 25496.7 Da PI: 6.6245 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B03522.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 35 | 2.6e-11 | 85 | 131 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h e Er+RR+++N +f Lr +P+ +++Ka+ L A +YI +L
Pahal.B03522.1 85 ASHVESERQRREKLNCRFCDLRAAVPTV-----SRMDKASLLADAAQYIAEL 131
6899***********************6.....49**************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 243 aa
Download sequence Send
to blast |
MDEHLSPSSC SRPAPFSFSE ASCTILELPS FEVPEQWLLA DVVAAGENEN DDIAAAPSPS 60
APAPAPAKRR GRKPGPRPGA GAAAASHVES ERQRREKLNC RFCDLRAAVP TVSRMDKASL 120
LADAAQYIAE LHARVAQLEA DARHHAAVAR WEPASAGGDA AAAVGGELYV RKVGRDAAVV 180
RVTSGARHAR AWLLGALRSL ELQVQHACVS RARGVPTQDV LVDVPAGATA LQDDDDLRAA 240
LL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_B | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_E | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_F | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_G | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_I | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_M | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
| 5gnj_N | 2e-17 | 86 | 141 | 8 | 63 | Transcription factor MYC2 |
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