PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03446.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 283aa    MW: 30869.4 Da    PI: 7.0065
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03446.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09120167455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  Pahal.B03446.1 120 SHSLAERVRRERISERMRVLQALVPGC----DKVTGKALILDEIINYVQSLQ 167
                     8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.66E-11114171No hitNo description
SuperFamilySSF474592.62E-17114183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.656116166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16116180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-7120167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-10122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MANFSHLSQH MEHGLANASH GMPSFLFCHG AAAADSASLE TSSGVLDTSP RGTASVDKKI  60
RKPREDSASL SSAQSKDSNS KESTKRRGGK RERSSKEVDE EEEPKGYIHV RARRGQATDS  120
HSLAERVRRE RISERMRVLQ ALVPGCDKVT GKALILDEII NYVQSLQNQV EFLSMRIASL  180
SPVLYGFGID SDAFGDHTQK MEGMLHHEAL AMPASVMNRA PSQAIMHTNT STSSPSYEVH  240
GEGGTGISFP QDNGSYMVQT VGEPRQELFN QVAFSNHMCS FQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0855810.0BT085581.1 Zea mays full-length cDNA clone ZM_BFc0036H10 mRNA, complete cds.
GenBankEU9621210.0EU962121.1 Zea mays clone 240361 bHLH transcription factor GBOF-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803717.10.0transcription factor bHLH137-like
TrEMBLA0A2S3H1M20.0A0A2S3H1M2_9POAL; Uncharacterized protein
TrEMBLA0A2T7EUH40.0A0A2T7EUH4_9POAL; Uncharacterized protein
STRINGPavir.J05063.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-38bHLH family protein