PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03418.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family SBP
Protein Properties Length: 453aa    MW: 47209.7 Da    PI: 7.3617
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03418.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1314.1e-41121197278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC+adls++++yhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh l efD++krsCr+rL++hn+rrrk+q+
  Pahal.B03418.1 121 CAVDGCKADLSKCRDYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHLLAEFDDAKRSCRKRLDGHNRRRRKPQP 197
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.6E-36113182IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129118195IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.29E-38119200IPR004333Transcription factor, SBP-box
PfamPF031103.8E-31121194IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDWDLKMPVS WDLADLEHDA VPAIAAATAA PPAAASSGIA AAAAAAAAAA SARGAPSRAE  60
CSVDLKLGGL GEFGAADRMK EPAAPVPAGA ATAPAVVPSA SPMKRPRSGA SGAGGAQCPS  120
CAVDGCKADL SKCRDYHRRH KVCEAHSKTP VVVVAGREMR FCQQCSRFHL LAEFDDAKRS  180
CRKRLDGHNR RRRKPQPDTM NSGSFMTSQQ GLFSSAGTRF SSFPAPRPEP SWSGVIKSED  240
SSYYTHHQVL STRPHFAGST SSYSKEGRRF PFLQDGDQVS FSAGAAALEV STVCQPLLKT  300
VAPPPESSSS NKIFSDGLTP VLDSDCALSL LSSPANSSSV DVSRMVQPTE HIPMAQPLVP  360
SLHPQQQQQQ QHHQFGGSPG WFACSQAGSS GVASAAGAGG FACPPSVESE QLNTVLVVPS  420
SDGHEMNYHG IFHVGGEGSS DGTSPSLPFS WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-27109194184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177194KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538750.0BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803088.10.0squamosa promoter-binding-like protein 18 isoform X1
SwissprotQ0J0K11e-162SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLA0A2S3H1560.0A0A2S3H156_9POAL; Uncharacterized protein
STRINGGRMZM2G061734_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-42SBP family protein