PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B03335.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | SBP | ||||||||
Protein Properties | Length: 377aa MW: 39061.4 Da PI: 8.9715 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.2 | 4.3e-42 | 64 | 139 | 1 | 76 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC +dls ak yh rhkvC++h+k+p v+v+g+eqrfCqqCsrfh+l efD++krsCrrrL +hnerrrk+ Pahal.B03335.1 64 RCQVEGCGVDLSGAKPYHCRHKVCSMHTKTPRVVVAGMEQRFCQQCSRFHQLPEFDQGKRSCRRRLIGHNERRRKP 139 6*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.7E-34 | 60 | 126 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.394 | 62 | 139 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.7E-40 | 63 | 143 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.2E-32 | 65 | 138 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
METGGSGSGS NGGGSDDVRG LKFGKKIYFE QDAAAAAGGS GAAAGGRKGK GVASGPAPAA 60 APPRCQVEGC GVDLSGAKPY HCRHKVCSMH TKTPRVVVAG MEQRFCQQCS RFHQLPEFDQ 120 GKRSCRRRLI GHNERRRKPP PGPLTSRYGR LAASFQEPGR FRSFLLDFSY PRVPSSVRDA 180 WPAIQHGGDP MPGTIQWQGN QEVHPHRSTV VGYGNHAYIG HGGSVAGPSV LPAAFELPPG 240 GCVAGVATDS SCALSLLSTT QPWDTAQSAS HNRSPAMSEA SAFEGTPVAP SVMASSYTAA 300 GAWAGSRGPA AEGARSVQHP EDALHLVHPG SVHHGNFSGE LELALQGSGP SNPPHAHHGS 360 SGGTFSHSSN AMNWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-29 | 65 | 138 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025802689.1 | 0.0 | squamosa promoter-binding-like protein 17 | ||||
Swissprot | A3C057 | 1e-155 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | A0A2S3H0W6 | 0.0 | A0A2S3H0W6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba01711.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2527 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 3e-45 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B03335.1 |