 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B03269.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
NF-YC |
Protein Properties |
Length: 200aa MW: 21179.1 Da PI: 5.2621 |
Description |
NF-YC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B03269.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NF-YC | 169.8 | 3.2e-53 | 57 | 160 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92
ql++fw++q ie +tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt r w haeenkrrtl+ksdiaaa++rt++fdfl
Pahal.B03269.1 57 QLQMFWAEQyreIEATTDFKNHNLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRGWAHAEENKRRTLQKSDIAAAIARTEVFDFL 151
89******99999********************************************************************************** PP
NF-YC 93 vdivprdel 101
vdivprd+
Pahal.B03269.1 152 VDIVPRDDA 160
******986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MDPTKSSTPP PPPVMGAPVA YPPAAYPPAA AAGAYAPQLY APPAAAAAQQ AAAAQQQLQM 60 FWAEQYREIE ATTDFKNHNL PLARIKKIMK ADEDVRMIAA EAPVVFARAC EMFILELTHR 120 GWAHAEENKR RTLQKSDIAA AIARTEVFDF LVDIVPRDDA KDADAAAAAA AAAAAAGIPR 180 PAAGVPATDP LAYYYVPQQ*
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Functional Description ? help
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Source |
Description |
UniProt | Component of the NF-Y/HAP transcription factor complex. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FP100449 | 0.0 | FP100449.1 Phyllostachys edulis cDNA clone: bphyst023f20, full insert sequence. |