PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03216.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 339aa    MW: 36867.6 Da    PI: 7.1989
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03216.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.16.7e-1856105255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ LrellP++    ++K +Ka+ L +++eYI+ Lq
  Pahal.B03216.4  56 RSKHSATEQRRRSKINDRFQILRELLPHN----DQKRDKATFLLEVIEYIRFLQ 105
                     899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-2451126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1953129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.79954104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-1656109No hitNo description
SMARTSM003531.9E-1360110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MESGSRSSGG AGFDDDDGLA ARREVSSSLK ELTVRVDRKG GSCSDGGTDQ RPNTTRSKHS  60
ATEQRRRSKI NDRFQILREL LPHNDQKRDK ATFLLEVIEY IRFLQEKVQK YEATFPEWNQ  120
ENAKLLPWSN MYFRSFWKNA QSKGQIPGDS LPDPSHFMRN GSSPGSNFTG KLDDNHNMVT  180
SAAASGAQDQ TETDRMASLC YRSTETPANI TNNVLSQSQP QWTGPSPVDD CAVNSQMLNN  240
QQLAIDEGTI SVSSQYSQEL LNSLTHALQS SGVDLSQASI SVQINLGKRA VKRPAAGVPS  300
KAPTDPASSN EIGQQLAMLG GGAEDPSHAA KRHKPGNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9568110.0EU956811.1 Zea mays clone 1574597 transcription factor BIM2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801931.10.0transcription factor BIM2-like isoform X11
RefseqXP_025801932.10.0transcription factor BIM2-like isoform X12
TrEMBLA0A2S3H0N90.0A0A2S3H0N9_9POAL; Uncharacterized protein
STRINGPavir.J04606.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-65BES1-interacting Myc-like protein 2