PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B03035.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 445aa    MW: 47437 Da    PI: 9.8209
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B03035.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57388.48.7e-28191288297
          DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     +++rlws  De+v+L+Gl  ++a++g+   +++di ++   +++++s++v+ +q+++K+rrLK+K++   ++ak+g++p+f ++hd++++el k+
  Pahal.B03035.1 191 RPSRLWSLADELVILRGLAAYRARRGVlpGSMHDIAKLQGLIQSELSVQVTPTQVSDKVRRLKQKYNLLASRAKNGRDPDFPTPHDRSVYELGKR 285
                     679************************877888************************************************************** PP

          DUF573  95 iWg 97 
                     +Wg
  Pahal.B03035.1 286 VWG 288
                     **9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-25193288IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAPKRPAAPA AAPSGSASEA SDAEADAPLH HPSSPSPSKT PPPPNPNPKS SAAAPTLVAE  60
DSFAAGSDSG AAYDSDADHR PALRKAGAAA SPSRKPRSPM PRSRSRSRSP DAASESDGAA  120
SDADPAAGDA DGNASPLPPQ RQSRGEAAAI KPLSSRPMDP PRRSTVPSFA EPRPKRPRSV  180
AVPSSVEHLK RPSRLWSLAD ELVILRGLAA YRARRGVLPG SMHDIAKLQG LIQSELSVQV  240
TPTQVSDKVR RLKQKYNLLA SRAKNGRDPD FPTPHDRSVY ELGKRVWGPT TSAAGGNAAG  300
DGYEIAGVGG GGESEEELEI GESDEDVESE GDERARKNRR LKPIPMANGN VTGFGAVNAN  360
SRGKFDFEKG KDAYPYLWET VEDLSKEHPN GVAFKKAFEL IEGPKARGME EKLRKFRLTE  420
IRHQLRRMEL MKETVKMVLD ALEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336342KNRRLKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804708.10.0STOREKEEPER protein-like
TrEMBLA0A2S3H0F30.0A0A2S3H0F3_9POAL; Uncharacterized protein
STRINGPavir.Ba02051.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26713587
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.14e-12DNA-binding storekeeper protein-related transcriptional regulator