PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.B02754.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 306aa MW: 33099.1 Da PI: 6.2342

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B02754.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.1	7.8e-45	8	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF+Ptdeel+++yL++k+++ + +++evd+y+++PwdL ++ ++ +yfF++r+ k ++g r+nrat++gyWk+tgkdk v+++ Pahal.B02754.1 8 LPPGFRFRPTDEELLTHYLAPKAADAGFAP-AAVREVDLYRSQPWDLLPAAGGGGGCCYFFCRRSVKFPSGLRTNRATRAGYWKSTGKDKVVTRQ 101 79***********************888.78**********53555666688*******************************99 PP NAM 96 .........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge glkktLvfy+grap+gekt+Wvmheyrl Pahal.B02754.1 102 hgggsidsgRGEPLGLKKTLVFYRGRAPTGEKTNWVMHEYRL 143 8888887777777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-53	7	170	IPR003441	NAC domain
PROSITE profile	PS51005	50.852	8	170	IPR003441	NAC domain
Pfam	PF02365	4.4E-28	9	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGGGDGRLPP GFRFRPTDEE LLTHYLAPKA ADAGFAPAAV REVDLYRSQP WDLLPAAGGG 60 GGCCYFFCRR SVKFPSGLRT NRATRAGYWK STGKDKVVTR QHGGGSIDSG RGEPLGLKKT 120 LVFYRGRAPT GEKTNWVMHE YRLVQGHGYT SPMLATGSQS EWVICRMFMR KAPGEKSLLE 180 EETVPHSPLN NGHLQPSFDG CNGGKTTTAV GEASNPEHAN CFSDALAIAP ADRHHETACQ 240 GALQLNREAE LLMNCSASDY ASAAAPASEL QQQATLLLDE LSSDCFDDLL PQLLDYEGLP 300 FLQDF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-44	8	176	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-44	8	176	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-44	8	176	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-44	8	176	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-44	8	176	20	174	NAC domain-containing protein 19
3swm_B	6e-44	8	176	20	174	NAC domain-containing protein 19
3swm_C	6e-44	8	176	20	174	NAC domain-containing protein 19
3swm_D	6e-44	8	176	20	174	NAC domain-containing protein 19
3swp_A	6e-44	8	176	20	174	NAC domain-containing protein 19
3swp_B	6e-44	8	176	20	174	NAC domain-containing protein 19
3swp_C	6e-44	8	176	20	174	NAC domain-containing protein 19
3swp_D	6e-44	8	176	20	174	NAC domain-containing protein 19
4dul_A	5e-44	8	176	17	171	NAC domain-containing protein 19
4dul_B	5e-44	8	176	17	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.
UniProt	Transcription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[ACG][CA]GT[AG](5-6n)[CT]AC[AG]-3' (PubMed:23340744). Promotes lateral root development (PubMed:16359384). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:9351240, PubMed:15295076, PubMed:20113437, PubMed:21303842). Regulates also genes during seed germination (PubMed:20113437). Regulates positively aging-induced cell death (PubMed:19229035). Involved in age-related resistance (ARR) against Pseudomonas syringae pv. tomato and Hyaloperonospora arabidopsidis (PubMed:19694953). Antagonizes GLK1 and GLK2 transcriptional activity, shifting the balance from chloroplast maintenance towards deterioration during leaf senescence (PubMed:23459204). Promotes the expression of senescence-associated genes, including ENDO1/BFN1, SWEET15/SAG29 and SINA1/At3g13672, during senescence onset (PubMed:23340744). {ECO:0000269\|PubMed:15295076, ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:21303842, ECO:0000269\|PubMed:23340744, ECO:0000269\|PubMed:23459204, ECO:0000269\|PubMed:9351240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: High levels during senescence (e.g. age-, salt- and dark-related) (PubMed:19229035, PubMed:20113437, PubMed:21511905, PubMed:22930749). By salt stress in an ethylene- and auxin-dependent manner (PubMed:16359384, PubMed:19608714, PubMed:20113437, PubMed:20404534). Induced by H(2)O(2) (PubMed:20404534). Accumulates in response to abscisic acid (ABA), ethylene (ACC) and auxin (NAA) (PubMed:16359384, PubMed:19608714). Repressed by high auxin (IAA) levels (PubMed:21511905). Age-related resistance (ARR)-associated accumulation (PubMed:19694953). Repressed by miR164 (PubMed:19229035). {ECO:0000269\|PubMed:16359384, ECO:0000269\|PubMed:19229035, ECO:0000269\|PubMed:19608714, ECO:0000269\|PubMed:19694953, ECO:0000269\|PubMed:20113437, ECO:0000269\|PubMed:20404534, ECO:0000269\|PubMed:21511905, ECO:0000269\|PubMed:22930749}.
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025801567.1	0.0	NAC domain-containing protein 92-like
Swissprot	Q9FKA0	3e-58	NAC92_ARATH; NAC domain-containing protein 92
Swissprot	Q9FLJ2	1e-57	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A2T7ES83	0.0	A0A2T7ES83_9POAL; Uncharacterized protein
TrEMBL	A0A2T8KQF5	0.0	A0A2T8KQF5_9POAL; Uncharacterized protein
STRING	Pavir.Ba02230.1.p	1e-133	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15352	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	5e-54	NAC domain containing protein 6

Link Out ? help Back to Top
Phytozome	Pahal.B02754.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Manacorda CA, et al. Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes. Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98 [PMID:23945002] Khan M,Rozhon W,Poppenberger B The role of hormones in the aging of plants - a mini-review. Gerontology, 2014. 60(1): p. 49-55 [PMID:24135638] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bohner A,Kojima S,Hajirezaei M,Melzer M,von Wirén N Urea retranslocation from senescing Arabidopsis leaves is promoted by DUR3-mediated urea retrieval from leaf apoplast. Plant J., 2015. 81(3): p. 377-87 [PMID:25440717] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Kim H, et al. Circadian control of ORE1 by PRR9 positively regulates leaf senescence in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(33): p. 8448-8453 [PMID:30065116]