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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Pahal.B02724.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
MYB |
Protein Properties |
Length: 284aa MW: 31325 Da PI: 4.9661 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B02724.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++lv G +W+++++ g+ R++k+c++rw +yl
Pahal.B02724.1 14 KGPWTAEEDQKLVSFLLTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
79******************************99************97 PP
|
2 | Myb_DNA-binding | 56.2 | 7.9e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg ++eE++ +d++ +lG++ W++Ia++++ gRt++++k++w+++
Pahal.B02724.1 67 RGQLSEEEEKTVIDLHSELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111
67889*****************.*********.************97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGQL SEEEEKTVID LHSELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLRKMG 120 IDPATHRPLQ PAPDSRTSGS PEEEKAIAEV TPPGFGHEAF CVDEVSMAHL LDDIVIPGDV 180 LDALPAADGG GVSTAYSPGS SSSSSSSSYT DDASAPASSG GSSIVDGEWP EWPQMVEWPE 240 STWLDDVVTG PTPWEFEDPF LTYQRIALFD HHETWNNSRA ELF*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT083735 | 1e-148 | BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds. |
GenBank | BT085521 | 1e-148 | BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds. |
GenBank | BT085625 | 1e-148 | BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds. |