 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pahal.B02644.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 298aa MW: 32176.6 Da PI: 4.6455 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B02644.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.1 | 7.3e-19 | 90 | 145 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+++++t+eq++eLe Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
Pahal.B02644.1 90 RTKRRLTAEQVRELELSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 145
77889**************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 117.9 | 5.6e-38 | 91 | 182 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
krrl++eqv+ LE sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d+++L++a+d+l + +++L +++++Lr+++
Pahal.B02644.1 91 TKRRLTAEQVRELELSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDRLRAAHDELLAGRDALLADNDRLRSQVI 182
69****************9999******************************************************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MDPGRNMISS AVPFRAAGEG GAQVFLFGGG GGFLRVCRRA GGGAAGAADG WRRKRPFQLT 60
AHEELQLQLE LGDDELAGFD YELHGGPQER TKRRLTAEQV RELELSFEEE KRKLEPERKS 120
ELARRLGIAP RQVAVWFQNR RARWKAKQLE QDFDRLRAAH DELLAGRDAL LADNDRLRSQ 180
VITLTDKLQA KESSVPASAL QAAAYAPFEQ DQLCTETAIT GGAAPAAGYT GGAGDSPESY 240
LASARSPPSS SEDDCGGGDG DGGAFFLPDP DALLAAAAEE DGAQLSNWAW LWNEQQY*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 139 | 147 | RRARWKAKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356850 | 1e-107 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
