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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.B02509.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
LBD |
| Protein Properties |
Length: 355aa MW: 37678.9 Da PI: 6.173 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B02509.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 123.8 | 8.6e-39 | 66 | 166 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+++++k+l+ +++e+ +dam++l++++eara dPv G+v +i +lq+q+e+++ ela
Pahal.B02509.1 66 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVKKIQKTLRWIDPERGPDAMRALIFQSEARAADPVGGCVTIIEQLQRQIERTELELA 160
7********************************************************************************************** PP
DUF260 96 llkeel 101
++k+++
Pahal.B02509.1 161 YVKQQI 166
***986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MSSSSSSSAA SKPPPQPLLR LHVDTTAATT TNGSAASPGS ASSSHSSRSP RPSAAGPGGG 60
QNQNQACAAC KYQRRKCNPD CPLAPYFPAD QQRRFLNAHR LFGVKKIQKT LRWIDPERGP 120
DAMRALIFQS EARAADPVGG CVTIIEQLQR QIERTELELA YVKQQIAIYR QAAAVDPLGD 180
PAMILPAAAA VAGQDHQDNA AGAVGALYAG QEPIPPGAGI VFHDQQGYHV VKVDDQQNHR 240
PPPQQLYNYF CHDGTADDTS SSQDGSVQQY GGFADTGGLK IGSPVALGEQ LEQQCRLEAA 300
PPFVDAFDVK PQGLRATTER RGPADLVYPE DQHMEEAATA AAAPCHLELG FSSF*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP005388 | 2e-50 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. |
| GenBank | AP014964 | 2e-50 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012616 | 2e-50 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
