PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B02509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | LBD | ||||||||
Protein Properties | Length: 355aa MW: 37678.9 Da PI: 6.173 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.8 | 8.6e-39 | 66 | 166 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+++++k+l+ +++e+ +dam++l++++eara dPv G+v +i +lq+q+e+++ ela Pahal.B02509.1 66 ACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFGVKKIQKTLRWIDPERGPDAMRALIFQSEARAADPVGGCVTIIEQLQRQIERTELELA 160 7********************************************************************************************** PP DUF260 96 llkeel 101 ++k+++ Pahal.B02509.1 161 YVKQQI 166 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.65 | 65 | 166 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-36 | 66 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MSSSSSSSAA SKPPPQPLLR LHVDTTAATT TNGSAASPGS ASSSHSSRSP RPSAAGPGGG 60 QNQNQACAAC KYQRRKCNPD CPLAPYFPAD QQRRFLNAHR LFGVKKIQKT LRWIDPERGP 120 DAMRALIFQS EARAADPVGG CVTIIEQLQR QIERTELELA YVKQQIAIYR QAAAVDPLGD 180 PAMILPAAAA VAGQDHQDNA AGAVGALYAG QEPIPPGAGI VFHDQQGYHV VKVDDQQNHR 240 PPPQQLYNYF CHDGTADDTS SSQDGSVQQY GGFADTGGLK IGSPVALGEQ LEQQCRLEAA 300 PPFVDAFDVK PQGLRATTER RGPADLVYPE DQHMEEAATA AAAPCHLELG FSSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-25 | 67 | 190 | 12 | 131 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-25 | 67 | 190 | 12 | 131 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005388 | 2e-50 | AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04. | |||
GenBank | AP014964 | 2e-50 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-50 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680048.1 | 1e-113 | LOB domain-containing protein 6-like | ||||
TrEMBL | A0A2S3GZ98 | 0.0 | A0A2S3GZ98_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ba02946.1.p | 1e-167 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 2e-34 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B02509.1 |