PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02469.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 319aa    MW: 33595.3 Da    PI: 5.7145
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02469.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.83.9e-27113172258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp ++++ Y g+H++
  Pahal.B02469.1 113 DDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCAATKQVQRADEDPALFDVFYIGTHTC 172
                     8***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27104173IPR003657WRKY domain
SuperFamilySSF1182907.06E-25110172IPR003657WRKY domain
SMARTSM007744.3E-39112174IPR003657WRKY domain
PfamPF031061.3E-26113172IPR003657WRKY domain
PROSITE profilePS5081121.379113170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEMSGGGGRV VVELSQIKDL VRQLEGHLGG SQTQEHCRLL ASQISSLTEH SISLITSYCS  60
LDGGWKRPAA DAAAPSPLSD ASDAPFKATK KRKMTEKLKE RVSSAAGSDV PADDGHSWRK  120
YGQKEILGAK HPRGYYRCTH RHSQGCAATK QVQRADEDPA LFDVFYIGTH TCVQSGGAAA  180
AAGQAAAAAQ APEHNPGVHT LLQSLSSSLT VKTEGLIAAP DQEAPQGWAA TAPFCLSSTA  240
ASGWCPAPER SPFCAPSTSE NWGAAPATSD SNQHASCSFP PFELIAGDVQ FEFSEVMSAL  300
VDVPSEFHDD FDVASFFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-24113172968OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9713091e-67EU971309.1 Zea mays clone 361886 WRKY74 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800892.10.0probable WRKY transcription factor 30
TrEMBLA0A2S3GZ480.0A0A2S3GZ48_9POAL; Uncharacterized protein
STRINGSi030531m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-32WRKY DNA-binding protein 46