PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B02262.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 363aa    MW: 38880.1 Da    PI: 7.2158
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B02262.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05174193120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C  C+k+F+r  n++ H+
  Pahal.B02262.1 174 FSCAVCNKTFNRFNNMQMHM 193
                     89*****************9 PP
2zf-C2H213.70.00019264286123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C  Cgk+F  + + ++H +++
  Pahal.B02262.1 264 YACRRCGKRFAVRGDWRTHEKNC 286
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.17E-5169195No hitNo description
SMARTSM003550.64174196IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.055174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM00355230227259IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.93E-6250284No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6250284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035558264284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.704264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MHSYRAMHPY THHPYQHHAA SAAVPHAGGK QHGGDDDDDQ SMLLLSLWPP GHHHGGIAAA  60
SSACSSSPSI TSTATSMSMA AATAASYPWL SHHSSHYGGG GSSSSSTHSS FLFHEQAEPD  120
VSISLSIAPP CGSAGFAAPA APSTVTTVAP GGSQVPSQYW IPSAAEILVG STQFSCAVCN  180
KTFNRFNNMQ MHMWGHGSQY RKGSESLRGA ITVGTAPPAS LMRLPCYCCA EGCRNNIEHP  240
RARPLKDFRT LQTHYRRKHG ARPYACRRCG KRFAVRGDWR THEKNCGKLW FCVCGSDFKH  300
KRSLKDHVRS FGGGHAPHIV ESVAAEDDEE DDDDHDDADL LHHMVDDSGS GAGADPTDMV  360
VV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9679760.0EU967976.1 Zea mays clone 312187 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804620.10.0zinc finger protein WIP6-like
SwissprotQ9FX685e-98ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A2S3GYS40.0A0A2S3GYS4_9POAL; Uncharacterized protein
STRINGPavir.Ba03009.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-97C2H2-like zinc finger protein