PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B02119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 24822.7 Da PI: 4.822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.8 | 1.1e-17 | 46 | 92 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 ++GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Pahal.B02119.1 46 SFRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 92 69****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-12 | 45 | 92 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.85E-19 | 45 | 104 | No hit | No description |
SMART | SM00380 | 1.0E-34 | 46 | 109 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.4E-31 | 46 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 46 | 103 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.616 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MSDGEVSSPA SSGASSSLPQ SPAEAGPRRS RRGGEKRARD GGSHPSFRGV RMRAWGKWVS 60 EIREPRKKSR IWLGTFPTPE MAARAHDAAA LVVKGPAAVL NFPEMAAALP RPASAAPRDV 120 QAAAARAAAM EPPPIPGASA AAGAALPASA PAPPAAGQQE DDELEAIVEL PPLDEDAAEL 180 VTLGATSFSF HDAAQASWCL PEWIDDGAGY MAAAHDELFG LGGPDGDHGW GQSVGALLWN 240 L* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-18 | 41 | 103 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004857 | 1e-100 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. | |||
GenBank | AP014958 | 1e-100 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258281 | 1e-100 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798845.1 | 1e-167 | ethylene-responsive transcription factor TINY-like | ||||
Swissprot | Q9LYD3 | 6e-53 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2T7F407 | 1e-166 | A0A2T7F407_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8KUM9 | 1e-166 | A0A2T8KUM9_9POAL; Uncharacterized protein | ||||
STRING | Si018222m | 1e-127 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11590.1 | 4e-29 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B02119.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|