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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pahal.B02020.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family |
M-type_MADS |
Protein Properties |
Length: 347aa MW: 37598.2 Da PI: 11.0393 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B02020.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 72.4 | 3.9e-23 | 152 | 196 | 2 | 46 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
rienk +rqvtfskR++g+lKKA+ELS LC+a +av+ifs++++l
Pahal.B02020.1 152 RIENKERRQVTFSKRKAGVLKKASELSLLCGAHAAVVIFSKKQEL 196
8*****************************************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MSNTRKSCCL ADDRFFVEDG DRERSLSLIS TLHRDANNDG AARFFLKIDS RVRLGVGLHL 60 RRLPVPAAVP VRRPTFTSSS SKFLPFLAML PPTYTPSPPL LRSFHSTERV ALERSRGSKK 120 QSSRSRVVLR CATMVKPEGK KTKGKQVIEI RRIENKERRQ VTFSKRKAGV LKKASELSLL 180 CGAHAAVVIF SKKQELPQGG GEAGRASGGG NVLAMGTPSV DHVLRRFAPL PGDAYLPALE 240 DVGGAAERAT VEATVRQTEE TKARVAAEAA RMSAIGAMVL TAVPAGRERF WWEADVEALG 300 EAELPEFARA LQRLRDYVRR HAGKLQPSAA PAGTDGAGQP QASLNV*
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