PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.B01916.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | NF-YB | ||||||||
Protein Properties | Length: 173aa MW: 18990.3 Da PI: 4.7256 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 49.8 | 8.1e-16 | 37 | 136 | 6 | 97 |
NF-YB 6 rflPianvsrimkkvlPana........kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 ++lP a v r++k l a + kda e + fi ++++ a+d c + kr+tin+dd+l al ++ f +++epl++ l+++r+ Pahal.B01916.1 37 EELPKAIVRRLVKDKLAHVAgggegaevIVNKDAMAAFAESARIFIHYLSATANDMCMESKRQTINADDVLKALDEMEFSEFLEPLRTSLQEFRN 131 578999999999988865431111122158899999**********************************************************9 PP NF-YB 93 legek 97 ++++ Pahal.B01916.1 132 KNADR 136 99887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.9E-33 | 33 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.3E-9 | 38 | 110 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.37E-27 | 39 | 168 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MPRKATKEAE PQPAAAAQKE PAPAPAAPAA MTEAEVEELP KAIVRRLVKD KLAHVAGGGE 60 GAEVIVNKDA MAAFAESARI FIHYLSATAN DMCMESKRQT INADDVLKAL DEMEFSEFLE 120 PLRTSLQEFR NKNADRKSEA SKKQKEKRRK LNEESLPQKE NDPADDAEEN DD* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 150 | RKSEASKKQKEKRRKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT060559 | 1e-155 | BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds. | |||
GenBank | EU962697 | 1e-155 | EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | EU964046 | 1e-155 | EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | KJ728301 | 1e-155 | KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801207.1 | 1e-120 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A2S3GXZ1 | 1e-119 | A0A2S3GXZ1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Bb01701.1.p | 4e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10414 | 37 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27470.1 | 9e-33 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.B01916.1 |