PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Pahal.B01766.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HD-ZIP

Protein Properties

Length: 727aa MW: 80263.7 Da PI: 5.2022

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.B01766.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54	2.9e-17	72	122	6	56
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +ft+ q++ Le+l+++ +p+ ++r+eL +++gL+ rq+k+WFqNrR+k k Pahal.B01766.1 72 RFTAVQIQGLESLYQRYAHPDDSMRKELGARIGLDARQIKFWFQNRRTKIK 122 7************************************************87 PP
2	START	77.4	3.6e-25	227	451	4	194
HHHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 4 eeaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 e+a++e+v +a+ +e +W +++n +e++ ++ + +e +a+++ +++ +lv l d++ +W++ ++ + + +s Pahal.B01766.1 227 ERALYEFVMLAGKGELMWLPTTdgKILNDQEYRCHTFPGLLgpcpqgFVMEGTKATTLFRGTAFDLVGLLTDVS-RWSKIFPgiiaGVRASNNVS 320 66777777777777777777776666666666655545433677666677777888888888888888888888.88888888877444444444 PP TT...................EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEEC CS START 87 sg...................galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepks 158 sg +l +m+ +l + sp +p R++ f+R ++q + +wv+vdvS d + + ++ ++llpSg+l++++s Pahal.B01766.1 321 SGnftsldgliqevdadmtnfMELLQMNVDLWVKSPRAPnRNVKFLRVSKQIQNSQWVVVDVSMDGIRGIEPdgsRIGYLSCRLLPSGCLLRDMS 415 4455555555555555599999*****************************************9887776667889************* PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHH CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegak 194 ng ++vtw+ h+++++ +++ l+r+l +sg+a +++ Pahal.B01766.1 416 NGLCEVTWIVHAEYDETSVPPLFRQLFQSGTALAWQ 451 *****************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.7E-17	44	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.84E-15	59	122	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.386	64	124	IPR001356	Homeobox domain
SMART	SM00389	1.7E-15	66	128	IPR001356	Homeobox domain
CDD	cd00086	1.62E-14	68	122	No hit	No description
Pfam	PF00046	6.3E-15	71	122	IPR001356	Homeobox domain
CDD	cd14686	0.00617	115	151	No hit	No description
PROSITE profile	PS50848	22.741	215	447	IPR002913	START domain
SMART	SM00234	1.5E-4	224	464	IPR002913	START domain
SuperFamily	SSF55961	4.95E-13	226	442	No hit	No description
Pfam	PF01852	6.0E-20	331	451	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MENDWPLNNN DGQGNSLNPG NETGHLNWLN NLEEYDMDAL MGAADHVNTD QDDEDDEEHH 60 LQGGQSSKSG KRFTAVQIQG LESLYQRYAH PDDSMRKELG ARIGLDARQI KFWFQNRRTK 120 IKVKAVGDEN KDIQQENAQL QAENMELQQK LLCGTCRDPN EKWRLLNENA KLKDTKRRAQ 180 EYLIKLIHVA RIPHSETLEN LESASLNLVP FTDDCSTNQD TLLSYTERAL YEFVMLAGKG 240 ELMWLPTTDG KILNDQEYRC HTFPGLLGPC PQGFVMEGTK ATTLFRGTAF DLVGLLTDVS 300 RWSKIFPGII AGVRASNNVS SGNFTSLDGL IQEVDADMTN FMELLQMNVD LWVKSPRAPN 360 RNVKFLRVSK QIQNSQWVVV DVSMDGIRGI EPDGSRIGYL SCRLLPSGCL LRDMSNGLCE 420 VTWIVHAEYD ETSVPPLFRQ LFQSGTALAW QCEYMAILHS GHSSGRKSVL ELSQRMMASF 480 YTAVSKPVAL DPSNIVNEWC GICNIGTNMF QATVRMVIWN YSTVGQPSTL VLSATTTVWL 540 PGTPPQRIHE YLCNGQCRGE WDRFAYDGAV QGLSSIVTSR QLRGNVVSVL HPNDVLHQMN 600 SNMLIVQEAT SDLSCSLVVY SFIEKNMMRA IMDGGDNTTA FLLPSGFAIL PDGHVNHAAA 660 DAASSSNVPT SQNGPAGSLL TAAYQALLSS SAANHAAWTM DDAGNRVCQA ISKILAAVGA 720 NIAIPA*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MENDWPLNNN DGQGNSLNPG NETGHLNWLN NLEEYDMDAL MGAADHVNTD QDDEDDEEHH  60
LQGGQSSKSG KRFTAVQIQG LESLYQRYAH PDDSMRKELG ARIGLDARQI KFWFQNRRTK  120
IKVKAVGDEN KDIQQENAQL QAENMELQQK LLCGTCRDPN EKWRLLNENA KLKDTKRRAQ  180
EYLIKLIHVA RIPHSETLEN LESASLNLVP FTDDCSTNQD TLLSYTERAL YEFVMLAGKG  240
ELMWLPTTDG KILNDQEYRC HTFPGLLGPC PQGFVMEGTK ATTLFRGTAF DLVGLLTDVS  300
RWSKIFPGII AGVRASNNVS SGNFTSLDGL IQEVDADMTN FMELLQMNVD LWVKSPRAPN  360
RNVKFLRVSK QIQNSQWVVV DVSMDGIRGI EPDGSRIGYL SCRLLPSGCL LRDMSNGLCE  420
VTWIVHAEYD ETSVPPLFRQ LFQSGTALAW QCEYMAILHS GHSSGRKSVL ELSQRMMASF  480
YTAVSKPVAL DPSNIVNEWC GICNIGTNMF QATVRMVIWN YSTVGQPSTL VLSATTTVWL  540
PGTPPQRIHE YLCNGQCRGE WDRFAYDGAV QGLSSIVTSR QLRGNVVSVL HPNDVLHQMN  600
SNMLIVQEAT SDLSCSLVVY SFIEKNMMRA IMDGGDNTTA FLLPSGFAIL PDGHVNHAAA  660
DAASSSNVPT SQNGPAGSLL TAAYQALLSS SAANHAAWTM DDAGNRVCQA ISKILAAVGA  720
NIAIPA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	177	LKDTKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022684238.1	0.0	homeobox-leucine zipper protein ROC6-like
TrEMBL	A0A2T8IBW6	0.0	A0A2T8IBW6_9POAL; Uncharacterized protein
STRING	Pavir.Ga02365.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8324	17	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	7e-93	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.B01766.1