PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01765.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 717aa    MW: 79012 Da    PI: 6.1572
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01765.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-2163113656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +ft+eq++eLe+lF+++ yp+ e+  +LA+k+gL+ rqVk+WFqNrR ++k
  Pahal.B01765.1  63 RFTAEQIQELESLFQQCDYPDDEMHHDLAAKVGLEARQVKFWFQNRRSQMK 113
                     7***********************************************998 PP
2START92.48.8e-302234435205
                     HHHHHHHHHHHHC-TT-EEEE..EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S...EEEEEEEECTT CS
           START   5 eaaqelvkkalaeepgWvkss..esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla...kaetlevissg 88 
                      a++e++ +al +ep+W      +++n +e+     ++        + +ea ++ ++v + +     +l d++ +W+ +++   + +   ++ sg
  Pahal.B01765.1 223 HALKEFMMLALNDEPMWLPTMndKMLNDQEYKHHTFPGILgscpqgFVTEATEEATLVRARAYGIAGILTDVS-RWSMMFPgiiQGARSSKVVSG 316
                     6889**************999898888888887777777789999999***************8888888888.**********55555555555 PP

                     .......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  89 .......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdl 172
                            g +q ++a+l ++sp +p R + f+R+++q  + +w++vdvS+d  +         ++  ++llpSg+l+++++ng +kv+w+ ++++
  Pahal.B01765.1 317 sistsfdGLIQEITADLSVPSPRPPnRRVKFLRISKQ-IENKWAVVDVSIDGIRGILPggkRIGYTTCRLLPSGCLLQDMGNGLCKVIWIVRAEY 410
                     5666699******************************.99***********9887544456889******************************* PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqce 205
                     ++  ++ l+r++ +sg+a ga +w+a lq+qce
  Pahal.B01765.1 411 DDTAVPPLFRQFFQSGQALGAIRWLASLQKQCE 443
                     ********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2045113IPR009057Homeodomain-like
PROSITE profilePS5007116.63355115IPR001356Homeobox domain
SMARTSM003895.0E-1557119IPR001356Homeobox domain
SuperFamilySSF466893.51E-1759113IPR009057Homeodomain-like
CDDcd000866.33E-1663113No hitNo description
PfamPF000461.6E-1863113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084828.892210447IPR002913START domain
CDDcd088754.77E-73214443No hitNo description
SuperFamilySSF559611.1E-15217443No hitNo description
SMARTSM002346.6E-12219444IPR002913START domain
PfamPF018525.2E-23222443IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MDNEVELNNS GQSITHNNGN ETVPLHRTDQ EEYDINALPG AEDHVNTNQD KDDKEQSSEN  60
GKRFTAEQIQ ELESLFQQCD YPDDEMHHDL AAKVGLEARQ VKFWFQNRRS QMKVKAVGDE  120
NKDIRQENDK LLAQNKELQQ MLQQSCGRCH DAVDEKWRLL SENARLNHTY QRAQENLINL  180
IHDANLPPSA TMEHLASASL NLVPFTYNGK TTDQAAVLSY SRHALKEFMM LALNDEPMWL  240
PTMNDKMLND QEYKHHTFPG ILGSCPQGFV TEATEEATLV RARAYGIAGI LTDVSRWSMM  300
FPGIIQGARS SKVVSGSIST SFDGLIQEIT ADLSVPSPRP PNRRVKFLRI SKQIENKWAV  360
VDVSIDGIRG ILPGGKRIGY TTCRLLPSGC LLQDMGNGLC KVIWIVRAEY DDTAVPPLFR  420
QFFQSGQALG AIRWLASLQK QCEYMAIFRS SHVASSIISG APMSTPGRRS ILALARQMIS  480
SFHTTVSNPV TQKSDNVVEW DWHGSWGTAT EMSKATVRMI ISSCSPMGEP PAGQVLSATM  540
TVWLPGTPPQ RVHEYLCNQH RRVEWDTFAN TGAVQELSSV ITCPHLRGNV VSVLHPIDVA  600
DQTNSNMLIL QEATSDVSCS LVVYSFIETN LIYAVMDGAE NTSVFLLPSG FAILPDGHGR  660
AHHAAAASSS SAPTSHNGTA GSLHTAAYQA VLPGNASDIA VGTFDNAGYR AYNAVK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684238.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A2S3I6700.0A0A2S3I670_9POAL; Uncharacterized protein
STRINGPavir.Ga02365.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.11e-105protodermal factor 2