PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01559.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 730aa    MW: 79875.6 Da    PI: 5.2516
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01559.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.51.4e-1564116557
                     SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      ++t++q++eL +++e++ +p+ e+++ L + +gL  + Vk+WFqNrR + kk
  Pahal.B01559.1  64 KRHTPQQIQELMAAYEQCTHPDPEAMQALGTMIGLAPKLVKFWFQNRRSQVKK 116
                     579**********************************************9987 PP
2START119.74e-382194433205
                     HHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S..EEEEE..EE CS
           START   3 aeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla..kaetl..ev 84 
                     ae+ +++++ +a+ +ep+W   +   e++n  e++ kf+++ +      + +ea r++++v + +a+lv +++d + +W+et++   a+++  +v
  Pahal.B01559.1 219 AETSMEQFLVLATKGEPMWLPAAdggEMLNHVEYRAKFSPALFrlrpegFAVEATRDTAMVWGSAAELVVIFMDMA-RWSETFPgvVASVVagDV 312
                     68899*********************************99988***********************9999999988.********9666653379 PP

                     ECTT....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  85 issg....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtwveh 169
                     +s+g    g +qlm+ae+ + sp vp R + ++Ry++   + +w+++dvSvd    ++       + ++ ++llpSg+l+e++sng++kvtw+ h
  Pahal.B01559.1 313 VSTGsfadGQIQLMNAEMWVQSPRVPnRTVNILRYSKLVAERQWAVMDVSVDGIFGQEVlpaylPARYMGCRLLPSGCLLEDMSNGYCKVTWIVH 407
                     9999***********************************************9654444444667899**************************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +++++ + + ++++l  +g a ga +w+  lqrq+e
  Pahal.B01559.1 408 AEYDETTMPTVFKPLFLNGKALGACRWLTSLQRQRE 443
                     *********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-1545120IPR009057Homeodomain-like
SuperFamilySSF466897.1E-1547118IPR009057Homeodomain-like
PROSITE profilePS5007113.70257117IPR001356Homeobox domain
SMARTSM003891.4E-1359121IPR001356Homeobox domain
CDDcd000862.58E-1260117No hitNo description
PfamPF000463.2E-1364116IPR001356Homeobox domain
PROSITE profilePS5084830.999208447IPR002913START domain
SMARTSM002345.8E-18217444IPR002913START domain
PfamPF018521.3E-30219443IPR002913START domain
CDDcd088755.05E-72219443No hitNo description
SuperFamilySSF559614.89E-18221438No hitNo description
SuperFamilySSF559613.11E-9534722No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MGKGGQQANK NGHLDLNEPI PQLWNNDEDA IDDILGDEDP AHTDPEDEDY FPNRRSKPSK  60
KRVKRHTPQQ IQELMAAYEQ CTHPDPEAMQ ALGTMIGLAP KLVKFWFQNR RSQVKKKDQQ  120
EQNQQFQQAN ASLKAENRSL RKAILTQTCV TCCGKTLPFN PLLEKQQLLT KNARLKDEFL  180
RAFAIHSKII RDSAFTQPAP WISSSSSSEA DREALLRHAE TSMEQFLVLA TKGEPMWLPA  240
ADGGEMLNHV EYRAKFSPAL FRLRPEGFAV EATRDTAMVW GSAAELVVIF MDMARWSETF  300
PGVVASVVAG DVVSTGSFAD GQIQLMNAEM WVQSPRVPNR TVNILRYSKL VAERQWAVMD  360
VSVDGIFGQE VLPAYLPARY MGCRLLPSGC LLEDMSNGYC KVTWIVHAEY DETTMPTVFK  420
PLFLNGKALG ACRWLTSLQR QREYATALHS SLYPGNNNTA AEAAGMLKLA QQMMASFYAT  480
VSGPIAQSQA TISINDWFGS IGTGVERFDV AVRMVTWEKA GSSVAGEPAS WFLSATTTLW  540
LPGTPPERVF DYLRNEQRRG EWDFVHTNGA VVEEMSSVSM GYLAGNVTSI LSSNKTDGTN  600
DRTLILQEAR TDASGSLVVY TPIGEEAMDA AMGGGDGASD FPTPSGFAIL PDGRGKACHA  660
PSPAPSTSSS APVLRNDTGG SLVTMAYQVL LPGPLPDTAA GAFDDVGKLM CHVMEKIKNA  720
VEAEIVLPA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685891e-35BT068589.1 Zea mays full-length cDNA clone ZM_BFb0336J18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801379.10.0homeobox-leucine zipper protein ROC6-like
TrEMBLA0A2S3GXK70.0A0A2S3GXK7_9POAL; Uncharacterized protein
STRINGPavir.Bb01096.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83241742
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.11e-110HD-ZIP family protein