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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Pahal.B01530.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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| Family |
BBR-BPC |
| Protein Properties |
Length: 360aa MW: 39363.9 Da PI: 10.0697 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Pahal.B01530.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 343.9 | 3.8e-105 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki.........rernlalsekkaavaerd..................maflqrdka 66
mdddgs rn+g+y+ k lglqlmss++ +rd+k ++ +++ ++ +++++rd m+f +++++
Pahal.B01530.1 1 MDDDGSLGiRNWGFYDTV---KGSLGLQLMSSVPaDRDTKSllpagaflhHHGHHNAPHQLHSHHSRDsggagtsggmptepqsihMDFSRNEAW 92
9*****999******987...99**********99******9*******977888888999999******************************* PP
GAGA_bind 67 laernkalverdnkllalllvensla...........salpvgvqvlsgt.ksidslqqlsepqledsave.lreeeklealpieeaaeeakekk 148
l+ ++ ++r++k+l+ +v + ++ p+g++++ ++ ++++++q +pql+ + +e + +e +p++e ++ +k+++
Pahal.B01530.1 93 LHP-SHHQHPREQKVLHARPVGPAGHvghpghgghavHHPPTGYGMMTDApHTLQMMQV--QPQLQSQLQEpPPCKEDDVPPPLVEDQSLVKTEP 184
***.9999***********9998877889999**999999999*999877245566665..5555555444233345556778888899999999 PP
GAGA_bind 149 kkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyP 243
+kkrq++++pk++k kk+kk ++++++ + +++ +r + +kk++++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+yP
Pahal.B01530.1 185 PVKKRQQGRQPKSPKPKKPKK-VAVPREDRAVNGHAPRGRGPKKTVGMVINGIELDLSNIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYP 278
9999*****************.77999999999999*********************************************************** PP
GAGA_bind 244 LPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
LP++tkrrgaRiagrKmSqgafkk+LekL +eGy+l+np+DLk++WAkHGtnkfvtir
Pahal.B01530.1 279 LPMNTKRRGARIAGRKMSQGAFKKVLEKLVGEGYNLANPIDLKTFWAKHGTNKFVTIR 336
*********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 360 aa
Download sequence Send
to blast |
MDDDGSLGIR NWGFYDTVKG SLGLQLMSSV PADRDTKSLL PAGAFLHHHG HHNAPHQLHS 60
HHSRDSGGAG TSGGMPTEPQ SIHMDFSRNE AWLHPSHHQH PREQKVLHAR PVGPAGHVGH 120
PGHGGHAVHH PPTGYGMMTD APHTLQMMQV QPQLQSQLQE PPPCKEDDVP PPLVEDQSLV 180
KTEPPVKKRQ QGRQPKSPKP KKPKKVAVPR EDRAVNGHAP RGRGPKKTVG MVINGIELDL 240
SNIPTPVCSC TGAPQQCYRW GAGGWQSACC TTSISTYPLP MNTKRRGARI AGRKMSQGAF 300
KKVLEKLVGE GYNLANPIDL KTFWAKHGTN KFVTIRAIQD KLSRFVCLIW LEICSSTFL*
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}. |
