PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01430.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1112aa    MW: 125979 Da    PI: 6.5674
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01430.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.91.3e-1510151074359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                      D ++W K G K++  s+  rsYYrC ++   gC+++k ++ ++++p+++  +Y  eHnhe
  Pahal.B01430.3 1015 DSWKWEKHGEKNIFASNLVRSYYRCLHRnstGCCATKFLQPNDTEPNMLSAMYIYEHNHE 1074
                      99***********************9998889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.80.10.102.6E-3611157IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520583.74E-2312161IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525408.46E-37217442IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009316.9E-30223470IPR002182NB-ARC
PRINTSPR003641.2E-12223238No hitNo description
PRINTSPR003641.2E-12293307No hitNo description
PRINTSPR003641.2E-12390404No hitNo description
SuperFamilySSF520586.01E-37505705IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.6E-36572697IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520586.01E-37735958IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.5E-14759975IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003641.2E-12938954No hitNo description
Gene3DG3DSA:2.20.25.802.3E-1610011076IPR003657WRKY domain
PROSITE profilePS5081118.83110081076IPR003657WRKY domain
SuperFamilySSF1182901.07E-1510101076IPR003657WRKY domain
SMARTSM007741.1E-1310131075IPR003657WRKY domain
PfamPF031065.5E-1410151074IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    Send to blast
MLWSQQGCSG LAQLPASLAT LKNLVALDLS CCYSLHTLPA SLGTLQNLQI LLLSCCHKLK  60
NLPVSLCLLS MLRLFDLSGC SSLEVLPDSF VNFDHLEILN LSDCTKLKKL PRAVGSLQEL  120
KYLNLSRCSG LDLDVKYLRS LANLKCLTLS PVTEYQSFPR SFLFIDIYLQ WSRWWKRSQF  180
HPQCNPKVGS LHSYRCYELG IIDMLLSDGS DEGDITSDQI VTSICIVGES GMGKTELVHR  240
IYNDQMILDA FNLRIWVYMC DKRGLLEKIA EFTTCAYCSN APISVLEEIV MEELSGKRLL  300
LVLDDSDVES HYFWGDVRKL LSVCAKGSAL IVTTKSSDIA KLIGAMQTFY LSPVSKEECF  360
MIFKEHALGG LDMNSYPQLE SIGWKVVEKS GGNPLCIKAL SGLLCHSELG YEIYMFVHRT  420
LPALRLCYDL LPSHLQQCFR FCSLFPKHHI FVKHHIIRLW ISQGFVLPEE GNQPEDTGLH  480
YFDELVCRSF FQRCPFRIDQ DDEYVMHELF HDLATSVSKN ECLRSEEPFC SLAENICHLS  540
LVLSDFKTVA LAKEARNLQS FLVIRGSFPV VRILPSDDLY MKFGLLRALN LSYTDILELP  600
RSIGNMKHLR LLALNSTKIK GLPFEIGQVG TLQTLELKDC CHLTDLPENT SNLTKLRHLD  660
VQKEPGNIKV GMPHGIGQLT DLQTLTEFNI GNNLSQCSIA EFKNLNGLRG HVHVTGLENI  720
KTADDAKEAN ILGKNFLESL TLEWYYNDED IDDGLCQEIA NNILQNLQPN SNLQKLVVQN  780
YPGNLFPLWM QDSYLSKLVS VTLDNCYGCS KLPYLGDLPS LKSLFIQRMN SIESFEIGSS  840
SLATEEERPP RYPSLEVLTL WEMYDLQFWV GTSEGDFPRI CRLSISRCPR LRNLPPLRSL  900
VHLSVHCSSQ VPSFSELPSL ESLKIEGFNK IRSISFPHQL TTLKKLEISD CKELSSMYAY  960
SLSVSDSRVV RCPKLDLVGS SLEDHHRKKV DGGRNSPTRR SMVLKTATYT DLQVDSWKWE  1020
KHGEKNIFAS NLVRSYYRCL HRNSTGCCAT KFLQPNDTEP NMLSAMYIYE HNHEFPNEPN  1080
LELSAEPATT RKRKEPDVPS DEHTSKRQLN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-36216790177758Disease resistance RPP13-like protein 4
6j5t_F2e-36216790177758Disease resistance RPP13-like protein 4
6j5t_G2e-36216790177758Disease resistance RPP13-like protein 4
6j5t_L2e-36216790177758Disease resistance RPP13-like protein 4
6j5t_O2e-36216790177758Disease resistance RPP13-like protein 4
6j5u_A2e-36216790177758Disease resistance RPP13-like protein 4
6j5v_A2e-36216790177758Disease resistance RPP13-like protein 4
6j5w_A2e-36216790177758Disease resistance RPP13-like protein 4
6j6i_C2e-36216790177758Disease resistance RPP13-like protein 4
6j6i_F2e-36216790177758Disease resistance RPP13-like protein 4
6j6i_G2e-36216790177758Disease resistance RPP13-like protein 4
6j6i_L2e-36216790177758Disease resistance RPP13-like protein 4
6j6i_O2e-36216790177758Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803328.10.0putative disease resistance protein RGA3 isoform X2
TrEMBLA0A2S3GX410.0A0A2S3GX41_9POAL; Uncharacterized protein
STRINGPavir.J20878.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.12e-13Disease resistance protein (TIR-NBS-LRR class)