PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.B01430.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 1355aa    MW: 152213 Da    PI: 6.9233
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.B01430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.61.6e-1512581317359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY    3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                      D ++W K G K++  s+  rsYYrC ++   gC+++k ++ ++++p+++  +Y  eHnhe
  Pahal.B01430.1 1258 DSWKWEKHGEKNIFASNLVRSYYRCLHRnstGCCATKFLQPNDTEPNMLSAMYIYEHNHE 1317
                      99***********************9998889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520473.92E-28236394No hitNo description
Gene3DG3DSA:3.80.10.106.8E-24239394IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF525401.18E-36460685IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009319.6E-30466713IPR002182NB-ARC
PRINTSPR003642.5E-12466481No hitNo description
PRINTSPR003642.5E-12536550No hitNo description
PRINTSPR003642.5E-12633647No hitNo description
SuperFamilySSF520587.65E-37748948IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.7E-12829940IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520587.65E-379781201IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.5E-1410021218IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003642.5E-1211811197No hitNo description
Gene3DG3DSA:2.20.25.803.0E-1612441319IPR003657WRKY domain
PROSITE profilePS5081118.83112511319IPR003657WRKY domain
SuperFamilySSF1182901.31E-1512531319IPR003657WRKY domain
SMARTSM007741.1E-1312561318IPR003657WRKY domain
PfamPF031067.0E-1412581317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1355 aa     Download sequence    Send to blast
MEAAKQEELA DMALQRKVSA GFLQGPGPAP PRKKKSVPYH PLSVPCHPYL NRSGSEQSEV  60
THEDGSSSGL LLDPPALDVA RASTHGEDDG KENAVSVASD ALQRLQEVYY VMILRMLGFR  120
ERNHKTTFNF TRSFSNRTTS TCSLGFASAV DARNLSRSDG RMHGSHGSIV AVLQKCRLLA  180
RGVHGVAGRA SAEDAKDARA LPVLAFDDLA CSGHNKVTRF TTRRIPAQMA EPIYSLPKAM  240
NNLLILDLSG CSGLAQLPAS LATLKNLVAL DLSCCYSLHT LPASLGTLQN LQILLLSCCH  300
KLKNLPVSLC LLSMLRLFDL SGCSSLEVLP DSFVNFDHLE ILNLSDCTKL KKLPRAVGSL  360
QELKYLNLSR CSGLDLDVKY LRSLANLKCL TLSPVTEYQS FPRSFLFIDI YLQWSRWWKR  420
SQFHPQCNPK VGSLHSYRCY ELGIIDMLLS DGSDEGDITS DQIVTSICIV GESGMGKTEL  480
VHRIYNDQMI LDAFNLRIWV YMCDKRGLLE KIAEFTTCAY CSNAPISVLE EIVMEELSGK  540
RLLLVLDDSD VESHYFWGDV RKLLSVCAKG SALIVTTKSS DIAKLIGAMQ TFYLSPVSKE  600
ECFMIFKEHA LGGLDMNSYP QLESIGWKVV EKSGGNPLCI KALSGLLCHS ELGYEIYMFV  660
HRTLPALRLC YDLLPSHLQQ CFRFCSLFPK HHIFVKHHII RLWISQGFVL PEEGNQPEDT  720
GLHYFDELVC RSFFQRCPFR IDQDDEYVMH ELFHDLATSV SKNECLRSEE PFCSLAENIC  780
HLSLVLSDFK TVALAKEARN LQSFLVIRGS FPVVRILPSD DLYMKFGLLR ALNLSYTDIL  840
ELPRSIGNMK HLRLLALNST KIKGLPFEIG QVGTLQTLEL KDCCHLTDLP ENTSNLTKLR  900
HLDVQKEPGN IKVGMPHGIG QLTDLQTLTE FNIGNNLSQC SIAEFKNLNG LRGHVHVTGL  960
ENIKTADDAK EANILGKNFL ESLTLEWYYN DEDIDDGLCQ EIANNILQNL QPNSNLQKLV  1020
VQNYPGNLFP LWMQDSYLSK LVSVTLDNCY GCSKLPYLGD LPSLKSLFIQ RMNSIESFEI  1080
GSSSLATEEE RPPRYPSLEV LTLWEMYDLQ FWVGTSEGDF PRICRLSISR CPRLRNLPPL  1140
RSLVHLSVHC SSQVPSFSEL PSLESLKIEG FNKIRSISFP HQLTTLKKLE ISDCKELSSM  1200
YAYSLSVSDS RVVRCPKLDL VGSSLEDHHR KKVDGGRNSP TRRSMVLKTA TYTDLQVDSW  1260
KWEKHGEKNI FASNLVRSYY RCLHRNSTGC CATKFLQPND TEPNMLSAMY IYEHNHEFPN  1320
EPNLELSAEP ATTRKRKEPD VPSDEHTSKR QLNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-364591033177758Disease resistance RPP13-like protein 4
6j5t_F4e-364591033177758Disease resistance RPP13-like protein 4
6j5t_G4e-364591033177758Disease resistance RPP13-like protein 4
6j5t_L4e-364591033177758Disease resistance RPP13-like protein 4
6j5t_O4e-364591033177758Disease resistance RPP13-like protein 4
6j5u_A4e-364591033177758Disease resistance RPP13-like protein 4
6j5v_A4e-364591033177758Disease resistance RPP13-like protein 4
6j5w_A4e-364591033177758Disease resistance RPP13-like protein 4
6j6i_C4e-364591033177758Disease resistance RPP13-like protein 4
6j6i_F4e-364591033177758Disease resistance RPP13-like protein 4
6j6i_G4e-364591033177758Disease resistance RPP13-like protein 4
6j6i_L4e-364591033177758Disease resistance RPP13-like protein 4
6j6i_O4e-364591033177758Disease resistance RPP13-like protein 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025803327.10.0putative disease resistance protein RGA3 isoform X1
TrEMBLA0A2S3GX410.0A0A2S3GX41_9POAL; Uncharacterized protein
STRINGPavir.J20878.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125771216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45260.12e-13Disease resistance protein (TIR-NBS-LRR class)