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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.B01336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 28326.8 Da PI: 7.2805 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +gr++AeIrdp r +r +lg+f+taeeAa+a++aar++++g Pahal.B01336.1 91 RFRGVRRRP-WGRFAAEIRDPQ----RgRRLWLGTFDTAEEAAAAYDAARLRIRG 140 69*******.**********92....46*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.2E-15 | 91 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-27 | 91 | 148 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.024 | 91 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.5E-30 | 91 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-20 | 92 | 148 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.4E-10 | 92 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MDPTSLKEEE MRAAEEVVGE GDLREVARAA AAPRCRVVRI IVHDEDATDS SSSEDEDEDE 60 DEEEEGEAGR SVKRSRTGGG GGEEDAAEGV RFRGVRRRPW GRFAAEIRDP QRGRRLWLGT 120 FDTAEEAAAA YDAARLRIRG PGASTNRPPS ADSDPLPPPA APLPPRPPPP PPQRLPQLPL 180 LPPKKQYLPP PPLLPPKKRL PSPPPVPPET GKQGGAASSA SPPAPPPFSP LPVWALLSGK 240 RKKRSGCGGR VPALRTPAAE EASRA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-19 | 87 | 153 | 1 | 68 | ATERF1 |
3gcc_A | 4e-19 | 87 | 153 | 1 | 68 | ATERF1 |
5wx9_A | 5e-19 | 81 | 152 | 4 | 76 | Ethylene-responsive transcription factor ERF096 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC133007 | 1e-41 | AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence. | |||
GenBank | AC139172 | 1e-41 | AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence. | |||
GenBank | AK066670 | 1e-41 | AK066670.1 Oryza sativa Japonica Group cDNA clone:J013074E02, full insert sequence. | |||
GenBank | AK068252 | 1e-41 | AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence. | |||
GenBank | AP014959 | 1e-41 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CU406213 | 1e-41 | CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025800803.1 | 7e-72 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A2T8KNC6 | 2e-70 | A0A2T8KNC6_9POAL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 1e-07 | cytokinin response factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.B01336.1 |