|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Pahal.B01336.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
Family |
ERF |
Protein Properties |
Length: 266aa MW: 28326.8 Da PI: 7.2805 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Pahal.B01336.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 91 | 140 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +gr++AeIrdp r +r +lg+f+taeeAa+a++aar++++g
Pahal.B01336.1 91 RFRGVRRRP-WGRFAAEIRDPQ----RgRRLWLGTFDTAEEAAAAYDAARLRIRG 140
69*******.**********92....46*************************98 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MDPTSLKEEE MRAAEEVVGE GDLREVARAA AAPRCRVVRI IVHDEDATDS SSSEDEDEDE 60 DEEEEGEAGR SVKRSRTGGG GGEEDAAEGV RFRGVRRRPW GRFAAEIRDP QRGRRLWLGT 120 FDTAEEAAAA YDAARLRIRG PGASTNRPPS ADSDPLPPPA APLPPRPPPP PPQRLPQLPL 180 LPPKKQYLPP PPLLPPKKRL PSPPPVPPET GKQGGAASSA SPPAPPPFSP LPVWALLSGK 240 RKKRSGCGGR VPALRTPAAE EASRA*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2gcc_A | 4e-19 | 87 | 153 | 1 | 68 | ATERF1 |
3gcc_A | 4e-19 | 87 | 153 | 1 | 68 | ATERF1 |
5wx9_A | 5e-19 | 81 | 152 | 4 | 76 | Ethylene-responsive transcription factor ERF096 |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC133007 | 1e-41 | AC133007.4 Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence. |
GenBank | AC139172 | 1e-41 | AC139172.2 Oryza sativa chromosome 3 BAC OSJNBb0042K11 genomic sequence, complete sequence. |
GenBank | AK066670 | 1e-41 | AK066670.1 Oryza sativa Japonica Group cDNA clone:J013074E02, full insert sequence. |
GenBank | AK068252 | 1e-41 | AK068252.1 Oryza sativa Japonica Group cDNA clone:J013145D23, full insert sequence. |
GenBank | AP014959 | 1e-41 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
GenBank | CU406213 | 1e-41 | CU406213.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108D05, full insert sequence. |